Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq8589 273 2e-68 seq10743 107 2e-18 >seq8589 Length=14632 Score = 273 bits (302), Expect = 2e-68 Identities = 426/598 (71%), Gaps = 16/598 (3%) Strand=Plus/Plus Query 93088 TAAGCAC-GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATG 93146 || |||| ||||| || ||| | ||||| || || || || ||||| || |||| Sbjct 5790 TATGCACTGCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAATG 5849 Query 93147 TTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-CCAGaa 93205 ||||||| || | | |||| |||||| | |||||| || ||| |||||| || || Sbjct 5850 TTAAACCAGGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAA-CAAAACGCTCCTGAG 5908 Query 93206 aaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTA 93265 || ||||| |||||||| ||||||||||| | || | ||| |||||| | || | | Sbjct 5909 AAGAATATTCCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAAAGAATCAGACTCA 5968 Query 93266 CTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325 ||||||||||| ||||| || |||||| | || || || | ||| ||| Sbjct 5969 ------ATCCATTTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACACTTCAATA 6022 Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385 || | |||| | |||| ||| || |||| | || ||||| || || |||||| Sbjct 6023 GCATGGAATAATTTATCTTTCTCTACCTCATCTTTCACATAAGTATCAATCAAAAGAGAA 6082 Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 || |||| ||| | ||||||||| |||||| ||||| |||||| || ||||||| Sbjct 6083 TAGGTTTCGCTATGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCG 6142 Query 93446 GTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504 | |||||||| || | ||||| | ||| | | ||||||||| || || || || || Sbjct 6143 GCATATTGCACTTCATTAACAAAAT-TTTCTGCTAAATTTTCATTCACAATCCCGTCAGA 6201 Query 93505 TGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-TTTAA--GCTT 93561 ||| ||||||||||| || |||||||| ||||||| ||| ||||| || ||||| | | Sbjct 6202 TGCAGCAAAAAAAGCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGT 6261 Query 93562 ATCCCAATCGGATAGATCTT-TTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTT 93620 | ||| || | | ||||| || || ||| | |||||| |||||||||| ||| | Sbjct 6262 GTTCCAGTCTGTGATATCTTGATGCAA-ATCTATTTCTTCAGCAGTCCAAAAACTTGCCT 6320 Query 93621 CTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACG 93678 | |||||||||| ||||| || || |||| | ||||||||| ||||||||||| Sbjct 6321 CCATTTTTTTGTACCATTCCCAAATATCATGATGCTTAATTGGAAAAATGACAAAACG 6378 >seq10743 Length=1036592 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465 ||| || ||||| ||||| |||||||| || || || || | ||||| ||||||||| | Sbjct 63487 CTCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACA 63546 Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525 || | |||||| |||||||||||||| || |||||| || ||||| || ||||||| Sbjct 63547 GAAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATAC 63606 Query 93526 ATGC 93529 |||| Sbjct 63607 ATGC 63610 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465 ||| || ||||| ||||| |||||||| || || || || | ||||| ||||||||| | Sbjct 76526 CTCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACA 76467 Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525 || | |||||| |||||||||||||| || |||||| || ||||| || ||||||| Sbjct 76466 GAAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATAC 76407 Query 93526 ATGC 93529 |||| Sbjct 76406 ATGC 76403 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465 ||| || ||||| ||||| |||||||| ||||| || || | ||||| ||||||||| Sbjct 81419 CTCAATAGCAATCTGGAAGCCGTAGAAGCATCTGGCCTCAGGAATCTGTACTTCTTGACT 81360 Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525 || | |||||| |||||||||||||| || |||||| || ||||| || ||||||| Sbjct 81359 GAAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATAC 81300 Query 93526 ATGC 93529 |||| Sbjct 81299 ATGC 81296 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465 ||| || ||||| ||||| |||||||| || || || || | ||||| ||||||||| | Sbjct 89774 CTCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACA 89715 Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525 || | |||||| |||||||||||||| || |||||| || ||||| || ||||||| Sbjct 89714 GAAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATAC 89655 Query 93526 ATGC 93529 |||| Sbjct 89654 ATGC 89651 Score = 102 bits (112), Expect = 9e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465 ||| || ||||| ||||| |||||||| || || || || | ||||| ||||||||| Sbjct 108301 CTCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACT 108360 Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525 || | |||||| |||||||||||||| || |||||| || ||||| || ||||||| Sbjct 108361 GAAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATAC 108420 Query 93526 ATGC 93529 |||| Sbjct 108421 ATGC 108424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556785595948960