Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq10485 136 3e-27 seq10777 122 7e-23 seq10493 95.1 1e-14 >seq10485 Length=261005 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||| ||||| ||||||| ||||| ||| | | | Sbjct 97662 ATGCAAATCTTTGTGAAGACCCTGACCGGGAAAACCATCACTCTAGAAGTTGAACCAAGC 97721 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||||||||||||||| || ||||| || || ||| Sbjct 97722 GACACAATCGAGAATGTGAAAGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 97781 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || || ||||| |||||| |||| ||| ||| ||| | ||| |||||| Sbjct 97782 CAACGACTCATCTTCGCCGGAAAACAGCTAGAAGATGGCCGAACCCTTAGCGACTACAAC 97841 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || ||||| || || | || || ||| Sbjct 97842 ATCCAGAAAGAGTCGACTCTTCACTTGGTT 97871 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||| ||||| ||||||| ||||| ||| | | | Sbjct 97890 ATGCAAATCTTTGTGAAGACCCTGACCGGGAAAACCATCACTCTAGAAGTTGAACCAAGC 97949 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||||||||||||||| || ||||| || || ||| Sbjct 97950 GACACAATCGAGAATGTGAAAGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 98009 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || ||||| ||||| | || ||| ||| ||| | ||| |||||| Sbjct 98010 CAGCGTTTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTTAGCGACTACAAC 98069 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || ||||| || || | || || ||| Sbjct 98070 ATCCAGAAAGAGTCGACTCTTCACTTGGTT 98099 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | || || || || |||| || ||||| || | | | Sbjct 97434 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACTATCACCCTAGAAGTTGAGCCTAGC 97493 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||||||||| || ||||| || || ||| Sbjct 97494 GATACGATCGAAAATGTGAAAGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 97553 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || ||||| | || ||| ||| ||| | ||| |||||| Sbjct 97554 CAGCGTTTAATTTTCGCTGGTAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACAAC 97613 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 97614 ATCCAGAAAGAGTCGACC 97631 >seq10777 Length=1546546 Score = 122 bits (134), Expect = 7e-23 Identities = 174/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 22201 TTTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACT 22260 |||| || ||| | | |||||||| ||||| ||||| | || |||||||| |||| Sbjct 767448 TTTTTTATTTTTTTCATCATGCAAATCTTTGTGAAAACACTCACTGGTAAAACTATCACC 767507 Query 22261 CTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAG 22320 || ||||| || | | || || | || || | ||| ||||||||||||||||| Sbjct 767508 CTAGAAGTCGAGCCTAGTGACACGATCGAGAATGTAAAAGCGAAAATTCAAGACAAGGAA 767567 Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 || ||||| || || ||||| ||| | || || ||||| |||||| | || ||| ||| Sbjct 767568 GGCATTCCCCCAGACCAACAGCGTTTAATTTTCGCCGGAAAACAGCTTGAAGATGGCCGA 767627 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 ||| | ||| |||||||| || ||||| || ||| | || | ||| | || | || Sbjct 767628 ACCCTAAGCGACTACAACATCCAGAAAGAGTCGACCCTTCACCTGGTTCTACGTCTCCGA 767687 Query 22441 GGAGG 22445 ||||| Sbjct 767688 GGAGG 767692 >seq10493 Length=264610 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||| | || || || || ||||| | ||||| ||| | | Sbjct 50651 ATGCAGATTTTCGTCAAAACTCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCAAGT 50710 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| || || |||||||| |||||||| ||||| || ||| Sbjct 50711 GACACAATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAA 50770 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||| || | || || ||||| | ||| |||||| Sbjct 50771 CAGAGGTTGATCTTTGCCGGCAAGCAACTTGAAGACGGTCGCACACTGAGCGACTACAAC 50830 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | ||| | ||| | || | || ||||| Sbjct 50831 ATCCAGAAGGAGTCCACACTTCATCTGGTTCTACGCCTTCGTGGAGG 50877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419672732840260