Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq10743 127 4e-24 >seq10743 Length=1036592 Score = 127 bits (140), Expect = 4e-24 Identities = 136/177 (77%), Gaps = 7/177 (4%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| || || ||||| ||||| || ||| |||||||||| ||||||| || ||| Sbjct 108004 CTGTTCAATGCTATTGAGACAATGCCTTGTGTCATGAAGAAGGCGCACTGGGCTCTGAAC 107945 Query 42669 TGGATCGAGAGTCCCGAC---GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTC 42725 |||||| | |||| | ||| | || ||||||||| | | |||||| | ||||| Sbjct 107944 TGGATCAA---TCCCCAGAGAGCATCATTTGGCGAGAGGATTATCGCCTTTGCTGCCGTA 107888 Query 42726 GAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782 |||||||||||||| || || |||| || |||| |||||||| ||| || ||||| Sbjct 107887 GAGGGCATCTTCTTTTCTGGGTCCTTTGCTGCCATTTTCTGGCTGAAGAAG-AGGTG 107832 Score = 125 bits (138), Expect = 1e-23 Identities = 135/175 (77%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| || || ||||| ||||| || ||| |||||||||| ||||||| || ||| Sbjct 63189 CTGTTCAATGCTATTGAGACAATGCCTTGTGTCATGAAGAAGGCGCACTGGGCTCTGAAC 63130 Query 42669 TGGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 |||||| | || || ||| | || ||||||||| | | |||||| | ||||| || Sbjct 63129 TGGATCAACCC-CCAGAGAGCATCATTTGGCGAGAGGATTATCGCCTTTGCTGCCGTAGA 63071 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782 |||||||||||| || || |||| || |||| |||||||| ||| || ||||| Sbjct 63070 GGGCATCTTCTTTTCTGGGTCCTTTGCTGCCATTTTCTGGCTGAAGAAG-AGGTG 63017 Score = 120 bits (132), Expect = 6e-22 Identities = 134/175 (77%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| || || ||||| ||||| || ||| |||||||||| ||||||| || ||| Sbjct 76735 CTGTTCAATGCTATTGAGACAATGCCTTGTGTCATGAAGAAGGCGCACTGGGCTCTGAAC 76794 Query 42669 TGGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 |||||| | || || || | || ||||||||| | | |||||| | ||||| || Sbjct 76795 TGGATCAACCC-CCAGAGAGCTTCATTTGGCGAGAGGATTATCGCCTTTGCTGCCGTAGA 76853 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782 |||||||||||| || || |||| || |||| |||||||| ||| || ||||| Sbjct 76854 GGGCATCTTCTTTTCTGGGTCCTTTGCTGCCATTTTCTGGCTGAAGAAG-AGGTG 76907 Score = 120 bits (132), Expect = 6e-22 Identities = 134/175 (77%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| || || ||||| ||||| || ||| |||||||||| ||||||| || ||| Sbjct 89982 CTGTTCAATGCTATTGAGACAATGCCTTGTGTCATGAAGAAGGCGCACTGGGCTCTGAAC 90041 Query 42669 TGGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 |||||| | || || || | || ||||||||| | | |||||| | ||||| || Sbjct 90042 TGGATCAACCC-CCAGAGAGCTTCATTTGGCGAGAGGATTATCGCCTTTGCTGCCGTAGA 90100 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782 |||||||||||| || || |||| || |||| |||||||| ||| || ||||| Sbjct 90101 GGGCATCTTCTTTTCTGGGTCCTTTGCTGCCATTTTCTGGCTGAAGAAG-AGGTG 90154 Score = 116 bits (128), Expect = 7e-21 Identities = 127/166 (77%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| || || ||||| ||||| || ||| |||||||||| ||||||| || ||| Sbjct 81718 CTGTTCAATGCTATTGAGACAATGCCTTGTGTCATGAAGAAGGCGCACTGGGCTCTGAAC 81777 Query 42669 TGGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 |||||| | || || || | || ||||||||| | | |||||| | ||||| || Sbjct 81778 TGGATCAACCC-CCAGAGAGCTTCATTTGGCGAGAGGATTATCGCCTTTGCTGCCGTAGA 81836 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG 42773 |||||||||||| || || |||| || |||| |||||||| ||| Sbjct 81837 GGGCATCTTCTTTTCTGGGTCCTTTGCTGCCATTTTCTGGCTGAAG 81882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944211666991040