Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq10493 91.5 1e-13 >seq10493 Length=264610 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/239 (68%), Gaps = 18/239 (8%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || || ||||||||||| ||| ||||||||| |||||||| || | Sbjct 49509 CCTCCACGAAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACTC 49450 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | || |||| || | |||||||||||| || || || | || || || ||| Sbjct 49449 AGTGTGCGTCCGTCTTCGAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGGTCGGGCGGA 49390 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA- 34079 | || ||||||||| |||||| ||| |||| | || | | |||| Sbjct 49389 ATGCCTTCTTTGTCCTGAATTTTCGCCTT---------CACATTTTCGATCGTATCGCTC 49339 Query 34080 --TTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 ||||||| || || ||||||||||| || || ||||||||||| ||||| || Sbjct 49338 GGTTCGACCTCTAAAGTGATGGTTTTTCCGGTCAGAGTCTTCACAAAGATCTGCATGTT 49280 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || || ||||||||||| ||| ||||||||| |||||||| || || Sbjct 50649 CCTCCTCTCAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTC-GCT 50591 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | ||| || |||| || | |||||||||||| || |||| | ||||| || || Sbjct 50590 CAGTGTGCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGG 50531 Query 34020 CACGCTCTCTTTGTC 34034 | | ||||||||| Sbjct 50530 GATACCCTCTTTGTC 50516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397010117304808