Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq10493 145 2e-29 seq10485 141 2e-28 seq10777 109 1e-18 >seq10493 Length=264610 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | || || ||||||| ||| || || ||||| || ||||| Sbjct 49510 TCCTCCACGAAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACT 49451 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || |||||||||||||| | ||| || || |||||||| || | ||||| || Sbjct 49450 CAGTGTGCGTCCGTCTTCGAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGGTCGGGCGG 49391 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||||||| ||||| |||||||| ||||| ||||| || | |||||||| ||| || Sbjct 49390 AATGCCTTCTTTGTCCTGAATTTTCGCCTTCACATTTTCGATCGTATCGCTCGGTTCGAC 49331 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| || || |||||||||||||| || || |||||||| Sbjct 49330 CTCTAAAGTGATGGTTTTTCCGGTCAGAGTCTTCACAAAGATCTGCAT 49283 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | || || ||||||| ||| || || ||||| || ||||| Sbjct 49738 TCCTCCACGAAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACT 49679 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || |||||||||||||| | ||| || || |||||||||| | || || ||| Sbjct 49678 CAGTGTGCGTCCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGG 49619 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || ||||| || ||||| || |||||||| || || || | || || | ||| || Sbjct 49618 GATACCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAAC 49559 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| | ||||| ||||| || || |||||||||||||| ||||||||| Sbjct 49558 TTCCAAAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 49510 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | || || ||||||| ||| || || ||||| || |||||| Sbjct 49966 TCCTCCACGAAGGCGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCT 49907 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| |||||||| | ||| || || |||||||||| | || || ||| Sbjct 49906 CAGTGTGCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGG 49847 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || ||||| || ||||| || |||||||| || || || | || || | ||| || Sbjct 49846 GATACCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAAC 49787 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| | ||||| ||||| || || |||||||||||||| ||||||||| Sbjct 49786 TTCCAAAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 49738 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | || || ||||||| ||| || || ||||| || |||||| Sbjct 50194 TCCTCCACGAAGGCGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCT 50135 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| |||||||| | ||| || || |||||||||| | || || ||| Sbjct 50134 CAGTGTGCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGG 50075 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || ||||| || ||||| || |||||||| || || || | || || | ||| || Sbjct 50074 GATACCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAAC 50015 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| | ||||| ||||| || || |||||||||||||| ||||||||| Sbjct 50014 TTCCAAAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 49966 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||||| ||| || || ||||| || |||||| || ||||| |||||| Sbjct 50634 AGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGTGTGCGACCGTCT 50575 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | ||| || || |||||||||| | || || |||||| || ||||| || Sbjct 50574 TCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGGATACCCTCTTTGTCT 50515 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || |||||||| || || || | || || | ||| ||||| | ||||| ||| Sbjct 50514 TGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTCCAAAGTGATGGTC 50455 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || |||||||||||||| ||||||||| Sbjct 50454 TTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 50422 >seq10485 Length=261005 Score = 141 bits (156), Expect = 2e-28 Identities = 149/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || |||||| || || || || ||||| | ||||||||| |||||| Sbjct 98080 TCTTTCTGGATGTTGTAGTCGCTAAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAG 98021 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || | ||||||||| |||||| || ||||| || || || ||||| |||||||| Sbjct 98020 ATGAAACGCTGTTGG---TCTGGGGGAATGCCTTCCTTGTCTTGAATTTTAGCTTTCACA 97964 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||||| | ||| ||||| || ||||| || ||||||||||| ||||| Sbjct 97963 TTCTCGATTGTGTCGCTTGGTTCAACTTCTAGAGTGATGGTTTTCCCGGTCAGGGTCTTC 97904 Query 288460 ACGAATATCTGCATT 288474 || || || |||||| Sbjct 97903 ACAAAGATTTGCATT 97889 Score = 136 bits (150), Expect = 9e-27 Identities = 148/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || |||||| || || || || ||||||| |||||||| |||||| Sbjct 97852 TCTTTCTGGATGTTGTAGTCGCTAAGGGTTCGGCCATCTTCTAGCTGTTTTCCGGCGAAG 97793 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || || ||||| |||||| || ||||| || || || ||||| |||||||| Sbjct 97792 ATGAGTCGTTGTTGG---TCTGGGGGAATGCCTTCCTTGTCTTGAATTTTAGCTTTCACA 97736 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||||| | ||| ||||| || ||||| || ||||||||||| ||||| Sbjct 97735 TTCTCGATTGTGTCGCTTGGTTCAACTTCTAGAGTGATGGTTTTCCCGGTCAGGGTCTTC 97676 Query 288460 ACGAATATCTGCATT 288474 || || || |||||| Sbjct 97675 ACAAAGATTTGCATT 97661 >seq10777 Length=1546546 Score = 109 bits (120), Expect = 1e-18 Identities = 166/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || ||||| | || || || |||| || ||||| ||||| || |||||| Sbjct 767693 TCCTCCTCGGAGACGTAGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCT 767634 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || || ||||| | |||||||| ||||| || | ||||||||| ||||| Sbjct 767633 TAGGGTTCGGCCATCTTCAAGCTGTTTTCCGGCGAAAATTAAACGCTGTTGG---TCTGG 767577 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || ||||| || || || ||||||||||| || || || || | || || | || Sbjct 767576 GGGAATGCCTTCCTTGTCTTGAATTTTCGCTTTTACATTCTCGATCGTGTCACTAGGCTC 767517 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| || ||||| || || || || || || || || || || ||||| ||| Sbjct 767516 GACTTCTAGGGTGATAGTTTTACCAGTGAGTGTTTTCACAAAGATTTGCATGATG 767462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179491104865112