Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq10493 127 2e-24 seq10777 107 2e-18 seq10803 87.8 2e-12 >seq10493 Length=264610 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || || || || || |||||||| || | ||||| ||||| Sbjct 50862 AGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGTGTGCGACCGTCT 50803 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| |||||||||||| | || | || ||| ||||| || || || || ||||| ||| Sbjct 50802 TCAAGTTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGTGGGATACCCTCTTTGTCT 50743 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| ||| | ||| |||| | || ||||| | ||| | ||| Sbjct 50742 TGGA-TCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTCCAAAGTGATGGT 50684 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || || | |||||| |||||||| |||||| Sbjct 50683 CTTTCCAGTGAGAGTTTTGACGAAAATCTGCATT 50650 Score = 122 bits (134), Expect = 9e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || || || || || |||||||| || | ||||| ||||| Sbjct 50406 AGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGTGTGCGACCGTCT 50347 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| ||||||||||| | || | || |||||||| || || || || ||||| ||| Sbjct 50346 TCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGGATACCCTCTTTGTCT 50287 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| ||| | ||| |||| | || ||||| | ||| | ||| Sbjct 50286 TGGA-TCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTCCAAAGTGATGGT 50228 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || || | |||||| |||||||| |||||| Sbjct 50227 CTTTCCAGTGAGAGTTTTGACGAAAATCTGCATT 50194 Score = 118 bits (130), Expect = 1e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || || || || || |||||||| || | ||||| ||||| Sbjct 49722 AGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACTCAGTGTGCGTCCGTCT 49663 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| ||||||||||| | || | || |||||||| || || || || ||||| ||| Sbjct 49662 TCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGGATACCCTCTTTGTCT 49603 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| ||| | ||| |||| | || ||||| | ||| | ||| Sbjct 49602 TGGA-TCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTCCAAAGTGATGGT 49544 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || || | ||| || |||||||| |||||| Sbjct 49543 CTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 49510 Score = 118 bits (130), Expect = 1e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || || || || || |||||||| || | ||||| ||||| Sbjct 49950 AGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGTGTGCGACCGTCT 49891 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| ||||||||||| | || | || |||||||| || || || || ||||| ||| Sbjct 49890 TCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGGATACCCTCTTTGTCT 49831 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| ||| | ||| |||| | || ||||| | ||| | ||| Sbjct 49830 TGGA-TCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTCCAAAGTGATGGT 49772 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || || | ||| || |||||||| |||||| Sbjct 49771 CTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 49738 Score = 118 bits (130), Expect = 1e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || || || || || |||||||| || | ||||| ||||| Sbjct 50178 AGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGTGTGCGACCGTCT 50119 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| ||||||||||| | || | || |||||||| || || || || ||||| ||| Sbjct 50118 TCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGGATACCCTCTTTGTCT 50059 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| ||| | ||| |||| | || ||||| | ||| | ||| Sbjct 50058 TGGA-TCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTCCAAAGTGATGGT 50000 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || || | ||| || |||||||| |||||| Sbjct 49999 CTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 49966 Score = 118 bits (130), Expect = 1e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || || || || || |||||||| || | ||||| ||||| Sbjct 50634 AGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGTGTGCGACCGTCT 50575 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| ||||||||||| | || | || |||||||| || || || || ||||| ||| Sbjct 50574 TCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGGATACCCTCTTTGTCT 50515 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| ||| | ||| |||| | || ||||| | ||| | ||| Sbjct 50514 TGGA-TCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTCCAAAGTGATGGT 50456 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || || | ||| || |||||||| |||||| Sbjct 50455 CTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 50422 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || || || || || |||||||| || | ||||| ||||| Sbjct 49494 AGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACTCAGTGTGCGTCCGTCT 49435 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||||||||| | || || | || |||||||| ||||| |||||||| || Sbjct 49434 TCGAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGGTCGGGCGGAATGCCTTCTTTGTCC 49375 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| || | ||||| | | || || |||| ||| | ||| Sbjct 49374 TGAATTTTCGCCTTCACATTTTCGATCGTATCGCTCGGTTCGACCTCTAAAGTGATGGTT 49315 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || ||||||| ||| || || || || ||||| || Sbjct 49314 TTTCCGGTCAGAGTCTTCACAAAGATCTGCATGTT 49280 >seq10777 Length=1546546 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| ||||| ||||| || |||||||| || | ||| || | ||| Sbjct 767677 AGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTTAGGGTTCGGCCATCT 767618 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||| || ||||| |||| | ||||| ||||| || ||||| ||||| || ||| Sbjct 767617 TCAAGCTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 767558 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| |||||| ||| | || |||| | || ||||||| || | || Sbjct 767557 TGAATTTTCGCTTTTACATTCTCGATCGTGTCACTAGGCTCGACTTCTAGGGTGATAGTT 767498 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||||| || || |||||||| Sbjct 767497 TTACCAGTGAGTGTTTTCACAAAGATTTGCAT 767466 >seq10803 Length=2816097 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 153782 GAAACTGGGCTGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCG 153841 |||| | || || || || ||||||||||| ||||||||||| ||||| ||||| || | Sbjct 2059771 GAAAGTAGGTTGGGCGATGAACACGTTAAAAGACTGGCTCTGGTCGATAAAAGCACCTCT 2059830 Query 153842 ATCGGCCGCCATGTCAATCAAGTTTTTACTGC-TCATTTCCCACACAGTTTTGTAGACGG 153900 || || ||||||||||||||| |||| | || ||||| || || ||||| | | Sbjct 2059831 GTCTGCGGCCATGTCAATCAAG-ACGCGCTGCTTAATCTCCCAGACTGTCTTGTACAAAG 2059889 Query 153901 CTTTAATGTC 153910 |||||| ||| Sbjct 2059890 CTTTAAGGTC 2059899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499577322969760