Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq10493 113 4e-20 seq10777 109 5e-19 seq10485 107 2e-18 seq10803 104 2e-17 >seq10493 Length=264610 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | ||| | | |||||||| || ||||||||||| ||| Sbjct 49509 CCTCCACGAAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACTC 49450 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| |||||||| || |||| |||| || | |||||||| || || Sbjct 49449 AGTGTGCGTCCGTCTTCGAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGGTCGGGCGGA 49390 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| |||| | || | | ||| | || ||| ||| || || Sbjct 49389 ATGCCTTCTTTGTC-CTGAATTTTCGCCTTCACATTTTCGATCGTATCGCTCGGTTCGAC 49331 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | ||||| || |||||||| || ||||| ||||||||| Sbjct 49330 CTCTAAAGTGATGGTTTTTCCGGTCAGAGTCTTCACAAAGATCTGCATG 49282 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || ||| || ||||| || |||| | Sbjct 50844 GACTCCTTCTGGATGTTGTAGTCGCTCAGTGTGCGACCGTCTTCAAGTTGCTTGCCGGCA 50785 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | ||||||||| || || ||||| |||||||| ||| || ||| | Sbjct 50784 AAGATCAACCTCTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGGATCTTGGCTTTCACA 50725 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | | || || || | || | || || ||||| |||||||| Sbjct 50724 TTCTCAATTGTGTCACTTGGTTCAACTTCCAAAGTGATGGTCTTTCCAGTGAGAGTTTTG 50665 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 50664 ACGAAAATCTGCAT 50651 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | ||| | | |||||||| || ||||||||||||||| Sbjct 50421 CCTCCACGAAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTC 50362 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || ||||| || |||| |||| | | || ||||| || || Sbjct 50361 AGTGTGCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGG 50302 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| |||||||| ||| || ||| | | || | ||||| | | || || Sbjct 50301 ATACCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACT 50242 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| |||||||| || ||||||||||| Sbjct 50241 TCCAAAGTGATGGTCTTTCCAGTGAGAGTTTTGACGAAAATCTGCAT 50195 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | ||| | ||| | | |||||||| || ||||||||||||||| Sbjct 50649 CCTCCTCTCAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTC 50590 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || ||||| || |||| |||| | | || ||||| || || Sbjct 50589 AGTGTGCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGG 50530 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| |||||||| ||| || ||| | | || | ||||| | | || || Sbjct 50529 ATACCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACT 50470 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| ||||| || || ||||||||||| Sbjct 50469 TCCAAAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 50423 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || ||| || ||||| || |||| Sbjct 49932 GACTCCTTCTGGATGTTGTAGTCGCTCAGTGTGCGACCGTCTTCAAGTTGCTTGCCGGCG 49873 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | || ||||| || || ||||| |||||||| ||| || ||| | Sbjct 49872 AAGATCAACCTTTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATCTTGGCTTTCACA 49813 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | | || || || | || | || || ||||| ||||| || Sbjct 49812 TTCTCAATTGTGTCACTTGGTTCAACTTCCAAAGTGATGGTCTTTCCAGTGAGAGTCTTG 49753 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 49752 ACGAAAATCTGCAT 49739 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || ||| || ||||| || |||| Sbjct 50160 GACTCCTTCTGGATGTTGTAGTCGCTCAGTGTGCGACCGTCTTCAAGTTGCTTGCCGGCG 50101 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | || ||||| || || ||||| |||||||| ||| || ||| | Sbjct 50100 AAGATCAACCTTTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATCTTGGCTTTCACA 50041 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | | || || || | || | || || ||||| ||||| || Sbjct 50040 TTCTCAATTGTGTCACTTGGTTCAACTTCCAAAGTGATGGTCTTTCCAGTGAGAGTCTTG 49981 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 49980 ACGAAAATCTGCAT 49967 >seq10777 Length=1546546 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | ||| | || | | | ||||| || || |||||||||||||| Sbjct 767692 CCTCCTCGGAGACGTAGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTT 767633 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || ||||| |||| | |||| |||||||||||| || || Sbjct 767632 AGGGTTCGGCCATCTTCAAGCTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGGGGA 767573 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| |||| | ||||| | || | ||||| | | ||| || Sbjct 767572 ATGCCTTCCTTGTCT-TGAATTTTCGCTTTTACATTCTCGATCGTGTCACTAGGCTCGAC 767514 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||||||||||| || ||||| ||||| || |||||| Sbjct 767513 TTCTAGGGTGATAGTTTTACCAGTGAGTGTTTTCACAAAGATTTGCATG 767465 >seq10485 Length=261005 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| | ||| | || | | | ||||| || || ||||||||||||||| Sbjct 97660 CCTCCTCTGAGACGTAGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTC 97601 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || |||||||||||||| | | |||| |||||||||||| || || Sbjct 97600 AGGGTTCGGCCATCTTCGAGTTGTTTACCAGCGAAAATTAAACGCTGTTGGTCTGGGGGA 97541 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| |||| | ||| | | ||| | || ||| | | ||| || Sbjct 97540 ATGCCTTCCTTGTC-TTGAATTTTAGCTTTCACATTTTCGATCGTATCGCTAGGCTCAAC 97482 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| || ||||| ||||| || ||||| Sbjct 97481 TTCTAGGGTGATAGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 97434 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| | ||| || || | | ||||| || || |||||||||||||| Sbjct 98116 CCTCCTCTGAGACGTAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTA 98057 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || ||||||||||| |||| |||| | |||||||||||| || || Sbjct 98056 AGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAGATGAAACGCTGTTGGTCTGGGGGA 97997 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| |||| | ||| | | || | |||||| | | || || Sbjct 97996 ATGCCTTCCTTGTC-TTGAATTTTAGCTTTCACATTCTCGATTGTGTCGCTTGGTTCAAC 97938 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || ||||| || || ||||| || ||||| Sbjct 97937 TTCTAGAGTGATGGTTTTCCCGGTCAGGGTCTTCACAAAGATTTGCAT 97890 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| | ||| || || | | ||||| || || |||||||||||||| Sbjct 97888 CCTCCTCTGAGACGTAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTA 97829 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || ||||| |||| |||| || || |||||||| || || Sbjct 97828 AGGGTTCGGCCATCTTCTAGCTGTTTTCCGGCGAAGATGAGTCGTTGTTGGTCTGGGGGA 97769 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| |||| | ||| | | || | |||||| | | || || Sbjct 97768 ATGCCTTCCTTGTC-TTGAATTTTAGCTTTCACATTCTCGATTGTGTCGCTTGGTTCAAC 97710 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || ||||| || || ||||| || ||||| Sbjct 97709 TTCTAGAGTGATGGTTTTCCCGGTCAGGGTCTTCACAAAGATTTGCAT 97662 >seq10803 Length=2816097 Score = 104 bits (114), Expect = 2e-17 Identities = 169/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 153027 TGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAA 153086 || ||||| | || ||||| || | || ||| ||||| | || | ||| |||||| | Sbjct 2060774 TGATTGACAATCTGGAACTCTCCTGACAGCACGCGTCTAGAGTAGATATTACTAGTGTAT 2060833 Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 || |||| |||||||||||||| ||||| ||||| |||| || || |||||| ||| Sbjct 2060834 GGCTCAATAGATTCGTTATTGCCAAGTATCTGAGCAGTGGACGCCGTGGGCATGGGCGCA 2060893 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTG-CGCTCGAATGTCGTCCTTCAACGCCTGCCAATC 153205 | || | | || || | ||| || || || || | ||||| ||||| ||| || Sbjct 2060894 ATCAGTAGACTGTTGCGGAGGCCATGTTCCTTGACCTTC-TTCTTCAGCGCCTCCCAGTC 2060952 Query 153206 CCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGG 153265 |||||| || || || | ||||| | |||||||| || | ||| | |||||||| Sbjct 2060953 CCACAGGTTTGAGGGAGTGACATTCCAGAGATCGTACTGCAATAACCCTTGGCTGGCGGG 2061012 Query 153266 A 153266 | Sbjct 2061013 A 2061013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496195379762880