Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq8589 125 8e-24 >seq8589 Length=14632 Score = 125 bits (138), Expect = 8e-24 Identities = 387/589 (66%), Gaps = 30/589 (5%) Strand=Plus/Plus Query 119493 ACGGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGT 119552 || ||||| || ||| | |||||||| ||||| || | ||| ||| ||| || || Sbjct 5795 ACTGCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTA--GAA--AATGT 5850 Query 119553 ----CCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAA 119608 |||||||| | ||||||||||||| |||||| || | |||||| ||| || || Sbjct 5851 TAAACCAGGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAA 5910 Query 119609 GAAGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTC 119668 ||| || || |||||| || || |||| || | |||||||||| |||| || Sbjct 5911 GAATATTCCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAAAGAATCAGAC---TC 5967 Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTCTA-TGCAGGGGACAGTTTGGATGGCTT 119727 | ||| || | ||||| | || || | | || ||| || ||| || || || | Sbjct 5968 AATCCATTTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACA-CTTCAATAGCAT 6026 Query 119728 CGAAAAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGG 119787 ||| | || | || || | |||| || | ||| ||||||| | ||| |||| Sbjct 6027 GGAATAATTTATCTTTCTCTACCTCATCTTTCACATAAGTATCAATCAAAAGAGAATAGG 6086 Query 119788 TCTCACCATGAACCATTTCATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAA 119847 | || | ||||| | || | ||| | |||| || | |||||||| | Sbjct 6087 TTTCGCTATGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCAT 6146 Query 119848 TTTGCACTTCGTCAGCAAAATTGT-TGTTGATATTTTCAAAAACAATTCCATCGGATCCA 119906 ||||||||| | | ||||||| | || | | ||||||| ||||| || || ||| || Sbjct 6147 ATTGCACTTCATTAACAAAATTTTCTGCT-AAATTTTCATTCACAATCCCGTCAGATGCA 6205 Query 119907 GCGAAGAATGCTAAGATGTACTTTATGAATTTCTGTTCATTATCGTTGAGT---GTTTTC 119963 || || || ||||| || | ||| || || | | ||||| || || | | || ||| Sbjct 6206 GCAAAAAAAGCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTC 6265 Query 119964 CAGTCGTCCATATCTTTAGACAAGTCCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCC 120023 ||||| ||||||| | ||| || | |||||||| ||||| | | || |||| Sbjct 6266 CAGTCTGTGATATCTTGATGCAAATCTATTTCTTCAGCAGTCCA-----AAAACT-TGCC 6319 Query 120024 ------TTTTTATAGAGTTCCCAAAGTTCAGGATACTTCAGGGGAAAAA 120066 ||||| || |||||||| ||| ||| ||| | ||||||| Sbjct 6320 TCCATTTTTTTGTACCATTCCCAAATATCATGATGCTTAATTGGAAAAA 6368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588896458791200