Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq10533 104 3e-17 seq10556 86.0 7e-12 >seq10533 Length=312431 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 153906 GCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACA 153965 || || ||||| |||||||| || |||| ||||| ||||| || ||||||||||||||| Sbjct 273088 GCCCTCCAGACAAGAGAGCAACACATCAAAAGAGATAAAGCCACAAGTAACATCTGCACA 273147 Query 153966 GCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGA 154025 || ||||| || || ||||| ||||| | | | ||||||| || |||||| | | ||| Sbjct 273148 GCACAGGCTCTTCTTGCTAACATGTCAGCAATGTATGCAGTGTACCATGGTCCTAAGGGA 273207 Query 154026 CT 154027 || Sbjct 273208 CT 273209 Score = 86.0 bits (94), Expect = 7e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 154935 ATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTA 154994 || ||||| || |||| || |||||||| | |||||||||||||| ||||| || || Sbjct 277053 ATTGTTCACTACCATGGCGGCCAGGTATACTTGGATGGAGCAAATCTGAATGCGCAAGTC 277112 Query 154995 GGACTAGCAAAACCATGTGAGTATGGTGCAGATGT-ATGTCATCTAAACTTACATAAAAC 155053 || || ||| || ||||| || ||||| ||| || ||||| || || || Sbjct 277113 GGCCTGTGTCGTCCAGCGGACTATGGCGCTGATGTCATG-CACAGTAACTTGCACAAGAC 277171 Query 155054 ATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||| || |||||||||||||| || || || | || ||||| || || Sbjct 277172 GTTCTGCATCCCACATGGAGGTGGTGGACCGGGAATGGGACCTATTGGAGT 277222 >seq10556 Length=355889 Score = 86.0 bits (94), Expect = 7e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 154935 ATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTA 154994 || ||||| || |||| || |||||||| | |||||||||||||| ||||| || || Sbjct 61532 ATTGTTCACTACCATGGCGGCCAGGTATACTTGGATGGAGCAAATCTGAATGCGCAAGTC 61591 Query 154995 GGACTAGCAAAACCATGTGAGTATGGTGCAGATGT-ATGTCATCTAAACTTACATAAAAC 155053 || || ||| || ||||| || ||||| ||| || ||||| || || || Sbjct 61592 GGCCTGTGTCGTCCAGCGGACTATGGCGCTGATGTCATG-CACAGTAACTTGCACAAGAC 61650 Query 155054 ATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||| || |||||||||||||| || || || | || ||||| || || Sbjct 61651 GTTCTGCATCCCACATGGAGGTGGTGGACCGGGAATGGGACCTATTGGAGT 61701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579134577311360