Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq10533 104 3e-17 seq10556 95.1 1e-14 >seq10533 Length=312431 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 158581 GCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACA 158640 || || ||||| |||||||| || |||| |||||| ||||| || ||||||||||||||| Sbjct 273088 GCCCTCCAGACAAGAGAGCAACACATCAAAAGAGATAAAGCCACAAGTAACATCTGCACA 273147 Query 158641 GCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCATGGTGCAGATGGA 158700 ||||| || || || ||||| ||||| | | ||||||| || |||||| | | ||| Sbjct 273148 GCACAGGCTCTTCTTGCTAACATGTCAGCAATGTATGCAGTGTACCATGGTCCTAAGGGA 273207 Query 158701 CT 158702 || Sbjct 273208 CT 273209 Score = 95.1 bits (104), Expect = 1e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 159610 ATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTA 159669 |||||||| | |||| || |||||||| | ||||| |||||||| ||||| || || Sbjct 277053 ATTGTTCACTACCATGGCGGCCAGGTATACTTGGATGGAGCAAATCTGAATGCGCAAGTC 277112 Query 159670 GGTCTAGCAAAACCATGTGACTATGGTGCAGATGT-ATGTCATCTAAACTTACATAAGAC 159728 || || ||| |||||||| || ||||| ||| || ||||| || ||||| Sbjct 277113 GGCCTGTGTCGTCCAGCGGACTATGGCGCTGATGTCATG-CACAGTAACTTGCACAAGAC 277171 Query 159729 ATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||| || |||||||||||||| || || || | || |||||||| || Sbjct 277172 GTTCTGCATCCCACATGGAGGTGGTGGACCGGGAATGGGACCTATTGGAGT 277222 >seq10556 Length=355889 Score = 95.1 bits (104), Expect = 1e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 159610 ATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTA 159669 |||||||| | |||| || |||||||| | ||||| |||||||| ||||| || || Sbjct 61532 ATTGTTCACTACCATGGCGGCCAGGTATACTTGGATGGAGCAAATCTGAATGCGCAAGTC 61591 Query 159670 GGTCTAGCAAAACCATGTGACTATGGTGCAGATGT-ATGTCATCTAAACTTACATAAGAC 159728 || || ||| |||||||| || ||||| ||| || ||||| || ||||| Sbjct 61592 GGCCTGTGTCGTCCAGCGGACTATGGCGCTGATGTCATG-CACAGTAACTTGCACAAGAC 61650 Query 159729 ATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||| || |||||||||||||| || || || | || |||||||| || Sbjct 61651 GTTCTGCATCCCACATGGAGGTGGTGGACCGGGAATGGGACCTATTGGAGT 61701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587971783685440