Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq10485 123 2e-23 seq10777 116 2e-21 seq10493 96.9 2e-15 >seq10485 Length=261005 Score = 123 bits (136), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| || | | | ||||||||||| || |||||||| ||||| ||||| Sbjct 97890 TTCCTCCTCTGAGACGTAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGC 97831 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| |||| |||| || |||||||||||||| || || |||||||| |||||| | | Sbjct 97830 TAAGGGTTCGGCCATCTTCTAGCTGTTTTCCGGCGAAGATGAGTCGTTGTTGGTCTGGGG 97771 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTC 34930 | | || |||||||| ||| || ||| || || || || | || | | || Sbjct 97770 GAATGCCTTCCTTGTCTTGAATTTTAGCTTTCAC--ATTCTCGATTGTGTCGCTTGGTTC 97713 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | || |||||||| || || || |||||||||||||| ||||| Sbjct 97712 AACTTCTAGAGTGATGGTTTTCCCGGTCAGGGTCTTCACAAAGATTTGCAT 97662 Score = 107 bits (118), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 |||||||| || | | | ||||||||||| || |||||||| ||||| ||||| Sbjct 98119 TTTCCTCCTCTGAGACGTAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCG 98060 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 |||| |||| |||| || || ||||||||||| || || | || || |||||| | Sbjct 98059 CTAAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAGATGAAACGCTGTTGGTCTGGG 98000 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCT 34929 || | || |||||||| ||| || ||| || || || || | || | | | Sbjct 97999 GGAATGCCTTCCTTGTCTTGAATTTTAGCTTTCAC--ATTCTCGATTGTGTCGCTTGGTT 97942 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || | || |||||||| || || || |||||||||||||| ||||| Sbjct 97941 CAACTTCTAGAGTGATGGTTTTCCCGGTCAGGGTCTTCACAAAGATTTGCAT 97890 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| || | | | ||||| ||||| || |||||||| ||||| ||||| Sbjct 97662 TTCCTCCTCTGAGACGTAGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGC 97603 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| |||| |||| || || ||||| || || || |||| || || |||||| | | Sbjct 97602 TCAGGGTTCGGCCATCTTCGAGTTGTTTACCAGCGAAAATTAAACGCTGTTGGTCTGGGG 97543 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| ||| || ||| || | | |||| || | | ||||| Sbjct 97542 GAATGCCTTCCTTGTCTTGAATTTTAGCTTTCACATTTTCGATCGTATCGCTAGGCTCAA 97483 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| || || || || ||||| || ||||||||||| ||||| Sbjct 97482 CTTCTAGGGTGATAGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 97434 >seq10777 Length=1546546 Score = 116 bits (128), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||||| || |||||||| ||||| ||||| ||| |||| |||| || Sbjct 767675 AACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTTAGGGTTCGGCCATCTTC 767616 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||||||||| || |||| || || |||||| | || | || |||||||| Sbjct 767615 AAGCTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTG 767556 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||| ||| ||| || || || |||| |||| | ||| || || | ||| || ||| Sbjct 767555 AATTTTCGCTTTTAC--ATTCTCGATCGTGTCACTAGGCTCGACTTCTAGGGTGATAGTT 767498 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || ||||| || ||||||||||| ||||| Sbjct 767497 TTACCAGTGAGTGTTTTCACAAAGATTTGCAT 767466 >seq10493 Length=264610 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| |||| |||| || ||||| ||||| ||||| || | ||| | || || Sbjct 49492 AACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACTCAGTGTGCGTCCGTCTTC 49433 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || ||||| || || |||| ||| ||||| |||| | || || ||||| Sbjct 49432 GAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGGTCGGGCGGAATGCCTTCTTTGTCCTG 49373 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| ||| || || | | |||| || | | || || || | || |||||||| Sbjct 49372 AATTTTCGCCTTCACATTTTCGATCGTATCGCTCGGTTCGACCTCTAAAGTGATGGTTTT 49313 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||| || ||||||||||||||||||||||| || Sbjct 49312 TCCGGTCAGAGTCTTCACAAAGATCTGCATGTT 49280 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| |||| | | ||||| |||| |||| || ||||| ||||| ||||| Sbjct 50651 TTCCTCCTCTCAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGC 50592 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 || | || | || || || || || ||||| || || | | |||||||||| | | Sbjct 50591 TCAGTGTGCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTG 50532 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTC 34930 | | ||||| ||||| ||||| ||| || || || || | |||| | || Sbjct 50531 GGATACCCTCTTTGTCTTGGATCTTGGCTTTCAC--ATTCTCAATTGTGTCACTTGGTTC 50474 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | || ||||| ||||| ||||||||||| || || |||||||| Sbjct 50473 AACTTCCAAAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 50423 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| |||| |||| || ||||| ||||| ||||| || | ||| | || || Sbjct 49720 AACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACTCAGTGTGCGTCCGTCTTC 49661 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || ||||| || || | | |||||||||| | || | ||||| ||||| Sbjct 49660 AAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGGATACCCTCTTTGTCTTG 49601 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| ||| || || || || | |||| | ||||| || | || ||||| Sbjct 49600 GATCTTGGCTTTCAC--ATTCTCAATTGTGTCACTTGGTTCAACTTCCAAAGTGATGGTC 49543 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| ||||||||||| || || |||||||| Sbjct 49542 TTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 49511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324590854276512