Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq8589 289 3e-73 seq10803 104 3e-17 seq10743 86.0 7e-12 >seq8589 Length=14632 Score = 289 bits (320), Expect = 3e-73 Identities = 441/618 (71%), Gaps = 15/618 (2%) Strand=Plus/Plus Query 18963 TGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACC 19022 ||||||||||||||| | ||| || || | | || || || ||||||||||||||||| Sbjct 5797 TGCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACC 5856 Query 19023 AGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATAT 19082 |||||| | |||||||| |||||||| || |||||| ||| | ||| || |||||||| Sbjct 5857 AGGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAAGAATAT 5916 Query 19083 ACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAAT 19142 ||||| || |||||||| || | |||||||| || || | |||| | | || Sbjct 5917 TCCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAAA---GAATCAGACTCA---AT 5970 Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 |||||| | |||||| || || || |||||| ||| | || |||| || || Sbjct 5971 CCATTTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACACTTCAATAGCATGGAA 6030 Query 19203 TAGATACATACG-CTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTT 19261 || || || ||| | |||||| ||||| | ||| ||||| | | || ||| Sbjct 6031 TA-ATTTATCTTTCTCTACCTCATCTTTCACATAAGTATCAATCAAAAGAGAATAGGTTT 6089 Query 19262 CTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT-TATC 19320 | ||||||||| || || || |||||||| || ||| || | ||||| | ||| Sbjct 6090 CGCTATGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCATAT- 6148 Query 19321 TGTACTTCACTA-CAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379 || |||||| || |||||| |||| | ||||||||||| || || || ||| || || Sbjct 6149 TGCACTTCATTAACAAAAT-TTTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCAGC 6207 Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTATTCCA 19436 |||||| ||||| | ||| |||||||||| |||||||||| ||||| || ||||| Sbjct 6208 AAAAAAAGCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTCCA 6267 Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496 || | ||||||| | ||||||| ||||||| | ||||||||| ||||| ||| Sbjct 6268 GTCTGTGATATCTTGATGCAAATCTATTTCTTCAGCAGTCCAAAAACTTGCCTCCATTTT 6327 Query 19497 TTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATT 19556 ||| ||| | ||| |||||| ||| | || ||||| || ||||| | | || || Sbjct 6328 TTTGTACCATTCCCAAATATCATGATGCTTAATTGGAAAAATGACAAAACGGTCCTTGTT 6387 Query 19557 TTCTTTAAGAATAGGTTC 19574 ||||| | ||| ||||| Sbjct 6388 TTCTTGTAAAATTGGTTC 6405 >seq10803 Length=2816097 Score = 104 bits (114), Expect = 3e-17 Identities = 215/316 (68%), Gaps = 3/316 (1%) Strand=Plus/Plus Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 || ||| || || || || ||||||| || || ||||| | || || |||| || Sbjct 2064207 AACACCAATTCCTCCAGCATTTTTAGAAATAAGTGCACAAGTCCTTAGAGTTCCATAGAT 2064266 Query 48539 TCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACA 48598 |||||| ||||||||||| ||| | | ||||| ||||| |||||||| || | Sbjct 2064267 TCCTTCAATACTATCATCAGACATTGTAAGAAGAAAGCAACTGGACATTTGTGGTCGGTT 2064326 Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 || |||| ||||| | ||||| |||||||| | ||||| || || || | || || Sbjct 2064327 TGTGCCTGCGTTAAACAGGGTTGGTGATGCATGGGTGAACCACTTTTCAGACATCAGGTT 2064386 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 || || |||||| ||| ||| || || || | || || || | | || ||||||| Sbjct 2064387 GTAAGTCTCAATAGCAGCATCAATGTCTTCACCG-TGGATTCCCACACTCACTCGCATTA 2064445 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | || ||||| || | | ||| ||| || || | || |||||| | || Sbjct 2064446 GCATGTGCTGTGGTCTCTCTGCTACCTTGCCATTGATCTTTAGTAGGTATGATCTCATCA 2064505 Query 48778 ATGT-TTTAAAACCAA 48792 | || || |||||||| Sbjct 2064506 AGGTCTTAAAAACCAA 2064521 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 48264 TCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGT 48323 ||||| || || |||| | || || ||||| || |||| || || ||||||||||| Sbjct 2063835 TCTTCCTTCCCTGTATTTTTCTTCAGGTCAAGGAATTCCAAAATGTCTGCATGCCATGGC 2063894 Query 48324 TCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCA 48383 |||| || ||||| | | || || | |||||| |||||||| || | ||||| ||| Sbjct 2063895 TCTAGGTAAATTGCAAAAGCTCCAGGCCTTTTATTGCCTCCTTGGTCCACATATCGCGCA 2063954 Query 48384 GTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 || ||| ||| |||| | |||||| || | ||||| || Sbjct 2063955 GTGCTGTCATACACTCGAAGCATTGGCACCAGGCCATTAGA 2063995 >seq10743 Length=1036592 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 19276 TCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAA 19335 || ||||| ||||| || ||||| || || || || || | ||||||||||| ||| Sbjct 63488 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 63547 Query 19336 AATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACA 19395 || | || || | ||||||||| || || ||||| || || ||||| ||||| |||||| Sbjct 63548 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 63607 Query 19396 TG 19397 || Sbjct 63608 TG 63609 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 19276 TCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAA 19335 || ||||| ||||| || ||||| || || || || || | ||||||||||| ||| Sbjct 76525 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 76466 Query 19336 AATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACA 19395 || | || || | ||||||||| || || ||||| || || ||||| ||||| |||||| Sbjct 76465 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 76406 Query 19396 TG 19397 || Sbjct 76405 TG 76404 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 19276 TCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAA 19335 || ||||| ||||| || ||||| || ||||| || || | ||||||||||| || Sbjct 81418 TCAATAGCAATCTGGAAGCCGTAGAAGCATCTGGCCTCAGGAATCTGTACTTCTTGACTG 81359 Query 19336 AATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACA 19395 || | || || | ||||||||| || || ||||| || || ||||| ||||| |||||| Sbjct 81358 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 81299 Query 19396 TG 19397 || Sbjct 81298 TG 81297 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 19276 TCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAA 19335 || ||||| ||||| || ||||| || || || || || | ||||||||||| ||| Sbjct 89773 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 89714 Query 19336 AATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACA 19395 || | || || | ||||||||| || || ||||| || || ||||| ||||| |||||| Sbjct 89713 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 89654 Query 19396 TG 19397 || Sbjct 89653 TG 89652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562032887206560