Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq8589 232 8e-56 >seq8589 Length=14632 Score = 232 bits (256), Expect = 8e-56 Identities = 409/592 (69%), Gaps = 23/592 (4%) Strand=Plus/Plus Query 37178 TGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCC 37237 ||||||||||||||| | |||||||| | | || || || |||||||| ||||| || Sbjct 5797 TGCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACC 5856 Query 37238 TGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAAT 37297 |||||||| |||||||| || | |||||| || | ||| | ||| || ||||| || Sbjct 5857 AGGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAAGAATAT 5916 Query 37298 ACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGA--- 37354 ||||| || ||||||||||| | ||| | | | | |||| ||||||| Sbjct 5917 TCCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAAAG---------AATCAGACTC 5967 Query 37355 AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTT 37414 |||||||||| || ||| ||||| ||| ||| | | || |||||| || | Sbjct 5968 AATCCATTTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACACTTCAATAGCATG 6027 Query 37415 TAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACAT 37474 || | | ||| ||| | |||| | | |||||||||||| | | | ||| | Sbjct 6028 GAATAATTTATCTTTCTCTACCTCATCTTTCACATAAGTATCAATCAAAAGAGAATAGGT 6087 Query 37475 TTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAA 37534 ||| |||||||| || || || ||||| ||||| ||| | ||||||| | | Sbjct 6088 TTCGCTATGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCATA 6147 Query 37535 TTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGC 37594 ||| || || |||| ||| | | ||||| |||||||| || ||||| ||| || || Sbjct 6148 TTGCACTTCATTAACAAAATTTTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCAGC 6207 Query 37595 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA---TCATTTGATAATTTTTTCCA 37651 ||| ||||| | || || || ||||||| | ||||| |||||| || | ||||| Sbjct 6208 AAAAAAAGCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTCCA 6267 Query 37652 ATCATTAATATCTTTTGAT--AAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCA 37709 || | ||||| ||||| ||||| | ||| ||| | ||||||||||||||| | || Sbjct 6268 GTCTGTGATATC--TTGATGCAAATCTATTTCTTCAGCAGTCCAAAAACTTGCC--TCCA 6323 Query 37710 CGTTTATACATCGT--CCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759 ||| | | | | ||||||||||| ||| | |||||||| || ||||| Sbjct 6324 TTTTTTTGTACCATTCCCAAATATCATGATGCTTAATTGGAAAAATGACAAA 6375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592236807616160