Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq10743 107 4e-18 seq10803 86.0 1e-11 >seq10743 Length=1036592 Score = 107 bits (118), Expect = 4e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 48205 CCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGC 48264 ||||| || ||||||||||| || || || || ||||| |||||||||||||| || || Sbjct 76905 CCTCTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGC 76846 Query 48265 CGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGC 48324 || || ||| | | |||||| || || ||||| ||| | ||||||| || || Sbjct 76845 AGCAAAGGCGATAATCCTCTCGCCAAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGC 76786 Query 48325 CCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||||| ||||||||| ||| || ||||| ||||| || || Sbjct 76785 CCAGTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGC 76744 Score = 107 bits (118), Expect = 4e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 48205 CCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGC 48264 ||||| || ||||||||||| || || || || ||||| |||||||||||||| || || Sbjct 90152 CCTCTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGC 90093 Query 48265 CGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGC 48324 || || ||| | | |||||| || || ||||| ||| | ||||||| || || Sbjct 90092 AGCAAAGGCGATAATCCTCTCGCCAAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGC 90033 Query 48325 CCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||||| ||||||||| ||| || ||||| ||||| || || Sbjct 90032 CCAGTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGC 89991 Score = 104 bits (114), Expect = 4e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 48205 CCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGC 48264 ||||| || ||||||||||| || || || || ||||| |||||||||||||| || || Sbjct 63019 CCTCTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGC 63078 Query 48265 CGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGC 48324 || || ||| | | |||||| || || || || ||| | ||||||| || || Sbjct 63079 AGCAAAGGCGATAATCCTCTCGCCAAATGATGCTCTCTGGGGGTTGATCCAGTTCAGAGC 63138 Query 48325 CCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||||| ||||||||| ||| || ||||| ||||| || || Sbjct 63139 CCAGTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGC 63180 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 48212 TTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAAC 48271 || ||||||||||| || || || || ||||| |||||||||||||| || || || || Sbjct 81881 TTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGCAAAG 81822 Query 48272 GCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCT 48331 ||| | | |||||| || || ||||| ||| | ||||||| || ||||||| Sbjct 81821 GCGATAATCCTCTCGCCAAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCAGTGC 81762 Query 48332 GCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||||||||| ||| || ||||| ||||| || || Sbjct 81761 GCCTTCTTCATGACACAAGGCATTGTCTCAATAGC 81727 Score = 104 bits (114), Expect = 4e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 48205 CCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGC 48264 ||||| || ||||||||||| || || || || ||||| |||||||||||||| || || Sbjct 107834 CCTCTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGC 107893 Query 48265 CGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGC 48324 || || ||| | | |||||| || || || || ||| | ||||||| || || Sbjct 107894 AGCAAAGGCGATAATCCTCTCGCCAAATGATGCTCTCTGGGGATTGATCCAGTTCAGAGC 107953 Query 48325 CCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||||| ||||||||| ||| || ||||| ||||| || || Sbjct 107954 CCAGTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGC 107995 >seq10803 Length=2816097 Score = 86.0 bits (94), Expect = 1e-11 Identities = 131/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 212858 CATGTCCTCGTTCCAGAGGCCCCTGG-TCTCCAGGCACTTGACCAGGTGAGGGTTGACTA 212916 |||| | |||||||| || ||| | | || || | |||| || ||| | ||||| | Sbjct 2060725 CATGCCATCGTTCCACAGACCCATCTCTGTCAAGTCT-TTGAGAAGATGATGATTGACAA 2060783 Query 212917 TCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGC 212976 ||||||| || ||||| ||||| | || ||| | || |||||| ||||| || Sbjct 2060784 TCTGGAACTCTCCTGACAGCACGCGTCTAGAGTAGATATTACTAGTGTATGGCTCAATAG 2060843 Query 212977 TCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGAC 213036 ||||| || || || ||||| |||||| || ||||||||||| || | ||| |||| Sbjct 2060844 ATTCGTTATTGCCAAGTATCTGAGCAGTGGACGCCGTGGGCATGGGCGCAATCAGTAGAC 2060903 Query 213037 TGTT 213040 |||| Sbjct 2060904 TGTT 2060907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931406996495360