Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq10743 114 2e-20 >seq10743 Length=1036592 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876 ||| || |||||||| ||||| |||| ||||||||| |||||| ||| | ||||||| Sbjct 76766 TCATGAAGAAGGCGCACTGGGCTCTGAACTGGATCAACCCCCAGAGAGCTTCATTTGGCG 76825 Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 || || | | ||||||||||| || ||||||||||| || || || ||||| |||| Sbjct 76826 AGAGGATTATCGCCTTTGCTGCCGTAGAGGGCATCTTCTTTTCTGGGTCCTTTGCTGCCA 76885 Query 25937 TCTTCTGGCTCAAGCAGA 25954 | |||||||| ||| ||| Sbjct 76886 TTTTCTGGCTGAAGAAGA 76903 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876 ||| || |||||||| ||||| |||| ||||||||| |||||| ||| | ||||||| Sbjct 90013 TCATGAAGAAGGCGCACTGGGCTCTGAACTGGATCAACCCCCAGAGAGCTTCATTTGGCG 90072 Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 || || | | ||||||||||| || ||||||||||| || || || ||||| |||| Sbjct 90073 AGAGGATTATCGCCTTTGCTGCCGTAGAGGGCATCTTCTTTTCTGGGTCCTTTGCTGCCA 90132 Query 25937 TCTTCTGGCTCAAGCAGA 25954 | |||||||| ||| ||| Sbjct 90133 TTTTCTGGCTGAAGAAGA 90150 Score = 111 bits (122), Expect = 3e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876 ||| || |||||||| ||||| |||| ||||||||| |||||| ||| | ||||||| Sbjct 81749 TCATGAAGAAGGCGCACTGGGCTCTGAACTGGATCAACCCCCAGAGAGCTTCATTTGGCG 81808 Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 || || | | ||||||||||| || ||||||||||| || || || ||||| |||| Sbjct 81809 AGAGGATTATCGCCTTTGCTGCCGTAGAGGGCATCTTCTTTTCTGGGTCCTTTGCTGCCA 81868 Query 25937 TCTTCTGGCTCAAG 25950 | |||||||| ||| Sbjct 81869 TTTTCTGGCTGAAG 81882 Score = 109 bits (120), Expect = 1e-18 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876 ||| || |||||||| ||||| |||| ||||||||| |||||| || | ||||||| Sbjct 63158 TCATGAAGAAGGCGCACTGGGCTCTGAACTGGATCAACCCCCAGAGAGCATCATTTGGCG 63099 Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 || || | | ||||||||||| || ||||||||||| || || || ||||| |||| Sbjct 63098 AGAGGATTATCGCCTTTGCTGCCGTAGAGGGCATCTTCTTTTCTGGGTCCTTTGCTGCCA 63039 Query 25937 TCTTCTGGCTCAAGCAGA 25954 | |||||||| ||| ||| Sbjct 63038 TTTTCTGGCTGAAGAAGA 63021 Score = 105 bits (116), Expect = 1e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876 ||| || |||||||| ||||| |||| |||||||| |||||| || | ||||||| Sbjct 107973 TCATGAAGAAGGCGCACTGGGCTCTGAACTGGATCAATCCCCAGAGAGCATCATTTGGCG 107914 Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 || || | | ||||||||||| || ||||||||||| || || || ||||| |||| Sbjct 107913 AGAGGATTATCGCCTTTGCTGCCGTAGAGGGCATCTTCTTTTCTGGGTCCTTTGCTGCCA 107854 Query 25937 TCTTCTGGCTCAAGCAGA 25954 | |||||||| ||| ||| Sbjct 107853 TTTTCTGGCTGAAGAAGA 107836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928719359509760