Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq548 82.4 7e-11 >seq548 Length=1094 Score = 82.4 bits (90), Expect = 7e-11 Identities = 172/250 (69%), Gaps = 10/250 (4%) Strand=Plus/Plus Query 38257 AAGTTGGACTATCTTTACGTAAATCTACAGCGAAATCCAATACTTCCCCACTTA-CACAA 38315 |||||||| |||| ||| | |||||| || | ||| || ||||| ||| || ||| Sbjct 351 AAGTTGGAGAGTCTTCACGAATATCTACCGCCACATCAAACACTTCACCAGATATCACT- 409 Query 38316 CGAACTAGCTTACCTTGCGGGTTATTTGTTTGAAAGTGCATTCCTCGCAAAACACCGAAG 38375 | ||||| || ||||| | ||| | ||||||| | |||| ||||| |||| || Sbjct 410 CTTACTAGTTTCCCTTGAGTGTTTTCTGTTTGATAATGCAATCCTCTTAAAATTCCTTTT 469 Query 38376 TTTGATTTAGACATG-TTATCTTGAACGAAA---GTTTGTCTACCA---ATAATATCTTC 38428 | ||||| || ||| ||||||||||| ||| || | | ||| | || ||||| Sbjct 470 CTCGATTTGGA-ATGATTATCTTGAACAAAAGACGTCGGCTTGCCAGTTACCATCTCTTC 528 Query 38429 GTATTTTTGTTCATTATATGTTTCTAGAAAGAAACCACGATCATCTTTATAAACGTCTGG 38488 | | || || ||| ||||||| | ||| |||||||| || || ||| ||| || Sbjct 529 AAACTGTTTTTGATTCCATGTTTCCATAAAAAAACCACGTTCGTCACCATACACGGTAGG 588 Query 38489 TTTGATAATT 38498 || |||||| Sbjct 589 TTCAATAATT 598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472566571264480