Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq10533 95.1 1e-14 seq10556 89.7 6e-13 >seq10533 Length=312431 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 139260 AGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGT 139319 ||||| | | |||||| || ||||||| | | | ||||| || || || || || ||| Sbjct 273209 AGTCCCTTAGGACCATGGTACACTGCATACATTGCTGACATGTTAGCAAGAAGAGCCTGT 273150 Query 139320 GCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGT 139379 ||||||||||||||||| || ||||| |||||| | || || |||||||| || || || Sbjct 273149 GCTGTGCAGATGTTACTTGTGGCTTTATCTCTTTTGATGTGTTGCTCTCTTGTCTGGAGG 273090 Query 139380 GC 139381 || Sbjct 273089 GC 273088 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || |||||||| || | || || || |||||||||||||| || ||||| ||||| || Sbjct 277222 ACTCCAATAGGTCCCATTCCCGGTCCACCACCTCCATGTGGGATGCAGAACGTCTTGTGC 277163 Query 138243 AAATTTAGATGACAT-ACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGC 138301 || || || ||| ||||| || |||||||| ||| || || || || || Sbjct 277162 AAGTTACTGTG-CATGACATCAGCGCCATAGTCCGCTGGACGACACAGGCCGACTTGCGC 277104 Query 138302 ATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGAT 138352 ||| |||||||| ||||| | |||||||| || |||| || ||||| || Sbjct 277103 ATTCAGATTTGCTCCATCCAAGTATACCTGGCCGCCATGGTAGTGAACAAT 277053 >seq10556 Length=355889 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || |||||||| || | || || || |||||||||||||| || ||||| ||||| || Sbjct 61701 ACTCCAATAGGTCCCATTCCCGGTCCACCACCTCCATGTGGGATGCAGAACGTCTTGTGC 61642 Query 138243 AAATTTAGATGACAT-ACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGC 138301 || || || ||| ||||| || |||||||| ||| || || || || || Sbjct 61641 AAGTTACTGTG-CATGACATCAGCGCCATAGTCCGCTGGACGACACAGGCCGACTTGCGC 61583 Query 138302 ATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGAT 138352 ||| |||||||| ||||| | |||||||| || |||| || ||||| || Sbjct 61582 ATTCAGATTTGCTCCATCCAAGTATACCTGGCCGCCATGGTAGTGAACAAT 61532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578920206266080