Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq8589 214 3e-50 seq10493 91.5 2e-13 >seq8589 Length=14632 Score = 214 bits (236), Expect = 3e-50 Identities = 429/624 (69%), Gaps = 21/624 (3%) Strand=Plus/Plus Query 18118 TTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACAC-GCAAAATCAGTGTGTA 18176 |||||||| |||||| |||| |||| || || |||| ||| ||||||||| || | Sbjct 5755 TTTTGGCACTTTATTTATTAAATGATGATTATG-AATATGCACTGCAAAATCACAATGCA 5813 Query 18177 AACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttt 18236 |||||||| | || ||||| |||||| ||| ||||| || ||||||| ||||||| Sbjct 5814 CTCCTTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACCAGGCATTAACCCTCTTT 5873 Query 18237 tttttAGCCAAAATATCGATGCGAAAC--TACTAGAAAAGAATATACCCTCAACGCACGC 18294 | |||| |||||| || || | |||| | || || |||||||| || || || || Sbjct 5874 TCTTTAACCAAAAAATAGAA-CAAAACGCTCCT-GAGAAGAATATTCCTTCCACAGCTGC 5931 Query 18295 GAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATCCATTTTTGTGCCCA 18354 || || || | ||||||||||||| | | | |||| ||||||||| |||||| Sbjct 5932 AAATGCGATAAGTCTTTCAGCAAAA--GAA--TCAGACTCA--ATCCATTTTAATGCCCA 5985 Query 18355 TTCTCCTTNNNNNNNNA-TACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTT 18413 |||| ||| | | | | | ||| || ||||||| || || | |||||| | Sbjct 5986 TTCTGCTTTTCTTTTTATTGCTGGAAACACT-TCAATAGCATGGAATAATTTATCTTTCT 6044 Query 18414 CTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTT 18473 || |||||| | |||||| || || || | |||||| |||| ||| || | | Sbjct 6045 CTACCTCATCTTTCACATAAGTATCAATCAAAAGAGAATAGGTTTCGCTATGAATATTCT 6104 Query 18474 CCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAA 18533 |||| || ||||| | ||| || || |||| |||| |||||| | || || || Sbjct 6105 CCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCATATTGCACTTCATTAACAA 6164 Query 18534 ATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACAT 18593 | ||||| | ||||| ||||| || || ||||||| | || ||||| || |||| || Sbjct 6165 AATTTTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCAGCAAAAAAAGCTAAAATAT 6224 Query 18594 ATTTAATGAAATGTTTTTCATTATCCTTGAGAT---TGTTCCATTCATCTATATCTTTTG 18650 ||||| |||| |||||||| || || | | ||||||| || ||||| ||| Sbjct 6225 GCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTCCAGTCTGTGATATC--TTG 6282 Query 18651 AT--AGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTTTATA 18708 || | ||| | |||||| | ||||||||| || || | ||||||| || | Sbjct 6283 ATGCAAATCTATTTCTTCAGCAGTCCAAAAACTTGCCTCCATTTTTTTGTACCATTCCCA 6342 Query 18709 AATATCTTCATGTTGTATAGGAAA 18732 |||||| | ||| | || ||||| Sbjct 6343 AATATCATGATGCTTAATTGGAAA 6366 >seq10493 Length=264610 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || ||| | || || |||| |||||||| || || ||||| |||||| Sbjct 49280 AACATGCAGATCTTTGTGAAGACTCTGACCGGAAAAACCATCACTTTAGAGGTCGAACCG 49339 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 |||| || ||| ||||| ||||| || || ||||||||||| || || || Sbjct 49340 AGCGATACGATCGAAAATGTGAAGGCGAAAATTCAGGACAAAGAAGGCATTCCGCCCGAC 49399 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||||||||| | || | ||||| ||||| |||||||| Sbjct 49400 CAACAAAGACTTATCTTCGCCGGCAAGCAACTCGAAGA 49437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731773160686400