Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq10485 114 3e-20 seq10777 95.1 2e-14 >seq10485 Length=261005 Score = 114 bits (126), Expect = 3e-20 Identities = 174/244 (71%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 192295 TTTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAG 192354 ||||||||| | | || ||||| ||||||| || || || | ||| | |||||| | Sbjct 98129 TTTAGTTTAGT--TTCCTCCTCTGAGACGTAGAACCAAGTGAAGAGTCGACTCTTTCTGG 98072 Query 192355 ATATTATAATCAGATAATG-TTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 || || || || | ||| | |||| |||| || | |||||| || || ||||| || | Sbjct 98071 ATGTTGTAGTC-GCTAAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAGATGAAACG 98013 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||| || || || || ||||| || ||||| |||||| ||| ||||| || | Sbjct 98012 CTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATTTTAGCTTTCACATTCTCGATTGT 97953 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || | ||| ||||||||||| |||||||| || || | || || | ||| || || Sbjct 97952 GTCGCTTGGTTCAACTTCTAGAGTGATGGTTTTCCCGGTCAGGGTCTTCACAAAGATTTG 97893 Query 192534 CATT 192537 |||| Sbjct 97892 CATT 97889 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| ||||||| || | || | || | |||||| ||| || || || Sbjct 97663 ATTCCTCCTCTGAGACGTAGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCG 97604 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| |||| || | |||||||||||| || ||||| | |||||| || || Sbjct 97603 CTCAGGGTTCGGCCATCTTCGAGTTGTTTACCAGCGAAAATTAAACGCTGTTGGTCTGGG 97544 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| ||| ||||| || | ||| | || Sbjct 97543 GGAATGCCTTCCTTGTCTTGAATTTTAGCTTTCACATTTTCGATCGTATCGCTAGGCTCA 97484 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 |||||||| || || || || ||||| | |||||| | ||| || |||||| Sbjct 97483 ACTTCTAGGGTGATAGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCATT 97433 Score = 100 bits (110), Expect = 6e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| ||||||| || || || | ||| | |||||| ||| || || || Sbjct 97891 ATTCCTCCTCTGAGACGTAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTC- 97833 Query 192367 GATAATG-TTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | ||| | |||| |||| || | ||||| || || ||||| | || ||||| || || Sbjct 97832 GCTAAGGGTTCGGCCATCTTCTAGCTGTTTTCCGGCGAAGATGAGTCGTTGTTGGTCTGG 97773 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| || ||||| |||||| ||| ||||| || | || | ||| Sbjct 97772 GGGAATGCCTTCCTTGTCTTGAATTTTAGCTTTCACATTCTCGATTGTGTCGCTTGGTTC 97713 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||||||||| |||||||| || || | || || | ||| || |||||| Sbjct 97712 AACTTCTAGAGTGATGGTTTTCCCGGTCAGGGTCTTCACAAAGATTTGCATT 97661 >seq10777 Length=1546546 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| ||||||| || | || | || | |||||| ||| || || || Sbjct 767695 ATTCCTCCTCGGAGACGTAGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCG 767636 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| |||| || | ||||| || || || ||||| | |||||| || || Sbjct 767635 CTTAGGGTTCGGCCATCTTCAAGCTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGG 767576 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| ||||| ||||||||| || | || | || Sbjct 767575 GGAATGCCTTCCTTGTCTTGAATTTTCGCTTTTACATTCTCGATCGTGTCACTAGGCTCG 767516 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || || ||||||||||| | |||||| | ||| || ||||| Sbjct 767515 ACTTCTAGGGTGATAGTTTTACCAGTGAGTGTTTTCACAAAGATTTGCAT 767466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984343722125400