Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq10485 102 1e-16 seq10777 93.3 8e-14 seq10493 91.5 3e-13 >seq10485 Length=261005 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | |||||||||||| |||||||| | ||||||||| || || || ||||| || Sbjct 97588 TCTTCGAGTTGTTTACCAGCGAAAATTAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTG 97529 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| |||||| ||| ||||| || ||||| | || |||||||| || || Sbjct 97528 TCTTGAATTTTAGCTTTCACATTTTCGATCGTATCGCTAGGCTCAACTTCTAGGGTGATA 97469 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||| | |||||| | || || |||||| Sbjct 97468 GTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCATT 97433 Score = 93.3 bits (102), Expect = 8e-14 Identities = 169/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 171828 TTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAA 171887 |||||||| | | || ||||| || |||| || || || | ||| | |||||| Sbjct 98129 TTTAGTTTAGT--TTCCTCCTCTGAGACGTAGAACCAAGTGAAGAGTCGACTCTTTCTGG 98072 Query 171888 ATATTATAATCTGATAAAGAT-CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 || || || || | ||| | | || | || || | |||||| || || || || || | Sbjct 98071 ATGTTGTAGTC-GCTAAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAGATGAAACG 98013 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||||||| || || || ||||| || ||||| |||||| ||| ||||| || || Sbjct 98012 CTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATTTTAGCTTTCACATTCTCGATTGT 97953 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || | ||| ||||||||||| |||||||| || || | || || | || || || Sbjct 97952 GTCGCTTGGTTCAACTTCTAGAGTGATGGTTTTCCCGGTCAGGGTCTTCACAAAGATTTG 97893 Query 172067 CATT 172070 |||| Sbjct 97892 CATT 97889 >seq10777 Length=1546546 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| || || |||||||| | ||||||||| || || || ||||| || ||||| ||| Sbjct 767611 TGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATT 767552 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||||||||| || || || | || |||||||| || || ||||||||| Sbjct 767551 TTCGCTTTTACATTCTCGATCGTGTCACTAGGCTCGACTTCTAGGGTGATAGTTTTACCA 767492 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | |||||| | || || ||||| Sbjct 767491 GTGAGTGTTTTCACAAAGATTTGCAT 767466 >seq10493 Length=264610 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | ||| || || ||||| || || ||||||||||| ||||| || || |||| Sbjct 50807 CGTCTTCAAGTTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGTGGGATACCCTCTT 50748 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || || ||| ||||| || || || | ||| ||||| | ||| | Sbjct 50747 TGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTCCAAAGTGA 50688 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 |||| || ||||| | ||||| | ||| ||||||||| Sbjct 50687 TGGTCTTTCCAGTGAGAGTTTTGACGAAAATCTGCATT 50650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905013761383200