Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8589 107 6e-18 >seq8589 Length=14632 Score = 107 bits (118), Expect = 6e-18 Identities = 362/558 (65%), Gaps = 17/558 (3%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || || ||||||||| | | || |||||| | ||| |||||| | | | Sbjct 6375 TTTGTCATTTTTCCAATTAAGCATCATGATATTTGGGAATGGTACAAAAAAATGGAGGCA 6316 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTT--ATCCAAAGACC-CAGCCCACTGGGAAGCC 133192 ||||||||| | ||| ||||||| ||| | | | | ||| ||||| | | Sbjct 6315 AGTTTTTGGACTGCTGAAGAAATAGATTTGCATCAAGATATCACAG---ACTGGAACACG 6259 Query 133193 C---TTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGT 133249 | | || ||||||||| |||||||| |||||||| ||||||||||| | Sbjct 6258 AAATTAAATGAAGATGAAAAATATTTTATTAAGCATATTTTAGCTTTTTTTGCTGCATCT 6199 Query 133250 GATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAA 133309 || || ||||| ||||||||||| | | ||| | ||||| ||| |||||| Sbjct 6198 GACGGGATTGTGAATGAAAATTTAGCAGAAAATTTTGTTAATGAAGTGCAATATGCCGAA 6139 Query 133310 GCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCT 133369 || || ||||| | || ||| |||||| ||||| ||| || |||||| Sbjct 6138 GCTAAATTTTTCTATGGATTTCAAATTATGATGGAGAATATTCATAGCGAAACCTATTCT 6079 Query 133370 ACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT 133429 | | ||||||||||| | |||||| || |||| | ||| ||||| | || ||| Sbjct 6078 CTTTTGATTGATACTTATGTGAAAGATGAGGTAGAGAAAGATAAATTATTCCATGCTATT 6019 Query 133430 AGCGAATTTCCTTGTATTAAAAAG-AAATCTGACTGGGCTATTAAATGGATCCAGGACAA 133488 | ||||| | | ||||||| ||| | || ||||| | |||||||| | Sbjct 6018 GAAGTGTTTCC-AGCAATAAAAAGAAAAGCAGAATGGGCATTAAAATGGAT------TGA 5966 Query 133489 GCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAG 133548 | || ||||||| | || | || ||||| | || || || || || ||| Sbjct 5965 GTCTGATTCTTTTGCTGAAAGACTTATCGCATTTGCAGCTGTGGAAGGAATATTCTTCTC 5906 Query 133549 TGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTT 133608 || ||||| || |||||||||||| | || || | || | | ||||| | || Sbjct 5905 AGGAGCGTTTTGTTCTATTTTTTGGTTAAAGAAAAGAGGGTTAATGCCTGGTTTAACATT 5846 Query 133609 TTCTAACGAACTTATTTC 133626 ||||||||| | ||||| Sbjct 5845 TTCTAACGAGTTAATTTC 5828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471613861808948