Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq2361 161 3e-35 seq6294 96.9 1e-15 >seq2361 Length=2839 Score = 161 bits (178), Expect = 3e-35 Identities = 243/339 (72%), Gaps = 21/339 (6%) Strand=Plus/Plus Query 23416 CGACCACCAAGCAGCAGAAGTTCGCCTCTGAAGCTGTCCACCACAATTTCGGTGGTGTAG 23475 || || ||||||||| | | ||| ||| | |||| || | ||||||||||||||| Sbjct 1961 CGGCCGCCAAGCAGCTGCATGGTGCC-CTGCA--TGTCGACGATGATTTCGGTGGTGTAG 2017 Query 23476 TTGGTCGCGCCGTCTTTTTCCCACTTGCGTGTCTGCAGCTTGCCGATGATCGCGCATTCA 23535 | |||||||||||||||||| ||| |||||||||||||| ||| || | Sbjct 2018 CGCTTAACGCCGTCTTTTTCCCACTCGCGGGTCTGCAGCTTGCCCTCGAT-----ATATA 2072 Query 23536 CTT-----CCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGA 23590 | | || |||||||| |||||||| ||||||||||| ||||||||||| | | | Sbjct 2073 CCTGCGAACCTTTGCGCAGGTACTCGCCAGCAATCTCGGCAACCTTGCCGAACAGCGACA 2132 Query 23591 CGCGGTGCCATTCGGTCTTTT---CCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTT 23647 | |||||||| ||||| || | |||| || ||| ||||||||||| |||| | Sbjct 2133 CACGGTGCCACTCGGTTTTCTCGACCTT---CTGGCCAGTCTGCTTGTCGGTCCACTGCT 2189 Query 23648 CCGACGTGGCCAGGCTGATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCG 23707 | || |||||||| | |||| ||| || | |||| || |||||||||| ||||| Sbjct 2190 CGCTGGTCGCCAGGCTCAGGTTGGTGACCGCGTTGCCGCTTGGCAGGTAGCGAGTTTCCG 2249 Query 23708 GGTCAT-TACCCAGGCGGCCAATCAGGTCTACTTTGTTA 23745 |||| | | | |||| ||| | ||| ||||||||| Sbjct 2250 GGTCCTGTCCGCAGG-TGCCGACCAGAATGACTTTGTTA 2287 >seq6294 Length=7318 Score = 96.9 bits (106), Expect = 1e-15 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 21072 CGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCCAGCTGAGCT 21131 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 6682 CGACAGGATTCGAACCTGTGACCGTCTGCTTAGAAGGCAGATGCTCTATCCAGCTGAGCT 6623 Query 21132 ACG 21134 ||| Sbjct 6622 ACG 6620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139265330313648