Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq10493 132 4e-26 seq10485 122 7e-23 >seq10493 Length=264610 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CG 29617 |||||| |||| ||| || |||| |||||| ||||| || || || ||||| || || | Sbjct 50650 TCCTCCTCTCAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCT 50591 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 || || ||||| || || ||||| ||||| || | ||||| |||||||| || || | Sbjct 50590 CAGTG-TGCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTG 50532 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 | ||||||||||||||||| | || ||| ||| | || | |||||| |||| | Sbjct 50531 GGATACCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAA 50472 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| | ||| || || || ||||| | || || || || ||||||||| Sbjct 50471 CTTCCAAAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 50422 Score = 129 bits (142), Expect = 5e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CG 29617 |||||| | | ||| || |||| |||||| ||||| || || || ||||| || || | Sbjct 50422 TCCTCCACGAAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCT 50363 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 || || ||||| || || ||||| ||||| || | ||||| |||||||| || || | Sbjct 50362 CAGTG-TGCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTG 50304 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 | ||||||||||||||||| | || ||| ||| | || | |||||| |||| | Sbjct 50303 GGATACCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAA 50244 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| | ||| || || || ||||| | ||||| || || ||||||||| Sbjct 50243 CTTCCAAAGTGATGGTCTTTCCAGTGAGAGTTTTGACGAAAATCTGCATT 50194 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CG 29617 |||||| | | ||| || |||| |||||| ||||| || || || ||||| || || | Sbjct 49738 TCCTCCACGAAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACT 49679 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 || || |||| || || ||||| ||||| || | ||||| |||||||| || || | Sbjct 49678 CAGTG-TGCGTCCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTG 49620 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 | ||||||||||||||||| | || ||| ||| | || | |||||| |||| | Sbjct 49619 GGATACCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAA 49560 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| | ||| || || || ||||| | || || || || ||||||||| Sbjct 49559 CTTCCAAAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 49510 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CG 29617 |||||| | | || || |||| |||||| ||||| || || || ||||| || || | Sbjct 49966 TCCTCCACGAAGGCGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCT 49907 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 || || ||||| || || ||||| ||||| || | ||||| |||||||| || || | Sbjct 49906 CAGTG-TGCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTG 49848 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 | ||||||||||||||||| | || ||| ||| | || | |||||| |||| | Sbjct 49847 GGATACCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAA 49788 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| | ||| || || || ||||| | || || || || ||||||||| Sbjct 49787 CTTCCAAAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 49738 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CG 29617 |||||| | | || || |||| |||||| ||||| || || || ||||| || || | Sbjct 50194 TCCTCCACGAAGGCGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCT 50135 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 || || ||||| || || ||||| ||||| || | ||||| |||||||| || || | Sbjct 50134 CAGTG-TGCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTG 50076 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 | ||||||||||||||||| | || ||| ||| | || | |||||| |||| | Sbjct 50075 GGATACCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAA 50016 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| | ||| || || || ||||| | || || || || ||||||||| Sbjct 50015 CTTCCAAAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 49966 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CG 29617 |||||| | | || || |||| |||||| ||||| || || || ||||| || || | Sbjct 50878 TCCTCCACGAAGGCGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCT 50819 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 || || ||||| || || ||||| ||||| ||| | ||||| || || || || || | Sbjct 50818 CAGTG-TGCGACCGTCTTCAAGTTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGTG 50760 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 | ||||||||||||||||| | || ||| ||| | || | |||||| |||| | Sbjct 50759 GGATACCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAA 50700 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| | ||| || || || ||||| | ||||| || || ||||||||| Sbjct 50699 CTTCCAAAGTGATGGTCTTTCCAGTGAGAGTTTTGACGAAAATCTGCATT 50650 >seq10485 Length=261005 Score = 122 bits (134), Expect = 7e-23 Identities = 170/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | ||| || |||| ||||| || || ||||| || ||||| || || Sbjct 97661 TCCTCCTCTGAGACGTAGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCT 97602 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| || ||| ||||||||||| ||||| | || || | || || || || || Sbjct 97601 CAGGGTTCGGCCATCTTCGAGTTGTTTACCAGCGAAAATTAAACGCTGTTGGTCTGGGGG 97542 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| || || |||||||| |||||| | ||| ||| |||| | || || | | || | Sbjct 97541 AATGCCTTCCTTGTCTTG-AATTTTAGCTTTCACATTTTCGATCGTATCGCTAGGCTCAA 97483 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAA 29793 |||| || || ||||| |||||||| | ||||| ||||| || |||||| | ||| Sbjct 97482 CTTCTAGGGTGATAGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCATTATGAAA 97427 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | ||| || ||||| ||||| || || ||||| || ||||| || || Sbjct 98117 TCCTCCTCTGAGACGTAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCT 98058 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||| || ||| ||||||||||| || || | || || | || || || || || Sbjct 98057 AAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAGATGAAACGCTGTTGGTCTGGGGG 97998 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| || || |||||||| |||||| | ||| ||| | || | ||||| |||| | Sbjct 97997 AATGCCTTCCTTGTCTTG-AATTTTAGCTTTCACATTCTCGATTGTGTCGCTTGGTTCAA 97939 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| ||||| || ||||| || || | ||| || ||||| || |||||| Sbjct 97938 CTTCTAGAGTGATGGTTTTCCCGGTCAGGGTCTTCACAAAGATTTGCATT 97889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385168476743364