Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq2361 167 7e-37 seq1102 82.4 2e-11 >seq2361 Length=2839 Score = 167 bits (184), Expect = 7e-37 Identities = 241/334 (72%), Gaps = 7/334 (2%) Strand=Plus/Plus Query 30056 CCGCCAAACATCTGCATC-TGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTC 30114 ||||||| || |||||| ||||| ||||||||||||||||| || || |||||||| | Sbjct 1964 CCGCCAAGCAGCTGCATGGTGCCC-TGCATGTCGACGATGATTTCGGTGGTGTAGCGCTT 2022 Query 30115 CTGACCGTCCTGCGCCTGCCACTTTCGAGTTCTG-AGTGAACCCTCGACGTACAGTTGCT 30173 ||||| | || |||| || || ||| || ||||||| || | ||| Sbjct 2023 AACGCCGTCTTTTTCC---CACTCGCGGGT-CTGCAGCTTGCCCTCGATATATACCTGCG 2078 Query 30174 GACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGT 30233 ||| || | || || || | ||||| || | ||| ||||| | | ||| |||| Sbjct 2079 AACCTTTGCGCAGGTACTCGCCAGCAATCTCGGCAACCTTGCCGAACAGCGACACACGGT 2138 Query 30234 GCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGG 30293 |||| ||||| ||| | |||||| ||||||||||| |||| ||||||||| | Sbjct 2139 GCCACTCGGTTTTCTCGACCTTCTGGCCAGTCTGCTTGTCGGTCCACTGCTCGCTGGTCG 2198 Query 30294 CGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCAC 30353 | ||| | | |||||| ||||| |||||| | |||| ||||||||||||||||| | Sbjct 2199 CCAGGCTCAGGTTGGTGACCGCGTTGCCGCTTGGCAGGTAGCGAGTTTCCGGGTCCTGTC 2258 Query 30354 CGACGTTGCCAACCAGAATGACTTTGTTAACGCC 30387 || | |||| |||||||||||||||||||| || Sbjct 2259 CGCAGGTGCCGACCAGAATGACTTTGTTAACCCC 2292 >seq1102 Length=1192 Score = 82.4 bits (90), Expect = 2e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 32999 CGCTTGAACTCGACGACCCAGACCCAGGGATTCGCGGCCCAGGAGTCGGCGCCGTTGATC 33058 |||| ||| || ||||||||||||||||| || ||| |||| ||||||| |||||||||| Sbjct 252 CGCTCGAATTCCACGACCCAGACCCAGGGGTTTGCGTCCCAAGAGTCGGGGCCGTTGATC 311 Query 33059 GACTCCCACAGCTCGCGCCATGCGTCGAACGGATC 33093 || ||||||| ||| | |||| |||| || Sbjct 312 GAACACCACAGCCAGCGGAACTGGTCGGACGGGTC 346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145619714957376