Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq10768 250 2e-60 seq8589 143 2e-28 seq10532 118 8e-21 seq10661 93.3 3e-13 seq10237 91.5 1e-12 >seq10768 Length=1303713 Score = 250 bits (276), Expect = 2e-60 Identities = 956/1476 (65%), Gaps = 39/1476 (3%) Strand=Plus/Minus Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484 ||||| |||||| || || || |||||||| | ||||||||| || ||||| || || || Sbjct 224634 GGCAGACACATTCAGTATGCCGTTGGCATCAATATCAAATGTCACCTCAATCTGTGGCAC 224575 Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544 ||||| | || ||||||||||| ||| | ||| | || || || || | || Sbjct 224574 TCCTCTTGGGGCTGGTGGGATCCCAGACAAGTCGAATTTCCCTAGCAGGTTGTTGTGCTT 224515 Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604 || | | || ||| || || || | | ||| || ||| ||| || || || ||||| Sbjct 224514 GGTAAGTGGTCTTTCCCCTTCAAACACTCTGATGGTCACTGCAGGCTGGTTGTCGGAATA 224455 Query 281605 AGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 281663 ||||| || |||| | ||| || || | ||||| ||||||| || | Sbjct 224454 CGTTGTGAAGG-TCTGTGTGGCTTTGGTTGGGATGCGAGCATTTCTTTCAATAAGTTTTG 224396 Query 281664 TCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 281723 |||| | | || ||||| || | ||||| || || |||| ||||| || || | | Sbjct 224395 TCATCACCTCTCCTGCTGTCTCAATGCCAAGTGAGAGTGGAGCCACATCTACCAGAAGCA 224336 Query 281724 TATT-TTGAAGTTTTTCATCAGT-TTGAC--CAACAAGAATAGCTGCTTGAATAGCAGCA 281779 || |||| ||| ||| | ||| | | || || ||||| |||| || ||| Sbjct 224335 CATCCTTGAC----TTCGTCACTCTTGTCTCCTGACAGGATGGCTGCCTGAACTGCTGCA 224280 Query 281780 CCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAA 281839 ||||| || ||||| |||||||| || | | | || ||| || ||| | || | Sbjct 224279 CCATAAGCCACAGCCTCATCAGGGTTGATGGACTTGTTCAGTGACTTGCCACTAAAGTAT 224220 Query 281840 TTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTC 281898 | ||| | | ||| | |||||| | ||||| ||||| ||||| | || | || Sbjct 224219 TCCTCAAGCATCT-TCTGGATCTTAGGTACACGAGTAGATCCACCAACCAGGACCACCTC 224161 Query 281899 ATGCACCTGTGATTTATCCAGT--TTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGA 281956 ||| | ||| | | | | | || | ||| | | |||| | || || || | | Sbjct 224160 ATGGA--TGTCACTCTTACTGAACTTAGCATCACTCAGAGCTTTGTTGACAGGATCCA-A 224104 Query 281957 CCAGCTCTAAACAAG-TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT- 282014 ||| | ||| || || ||||| | || || || | |||| | || | | | Sbjct 224103 GCAGGACAAAAATAGGTCAGAACACAAGTCCTCAAACCTTGCTCGGCT--GATTTTCGTG 224046 Query 282015 TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073 || || |||||||| || || | ||| || ||||| || | | || ||| || || Sbjct 224045 TAGAAATCAATTCCCTCAAAAAGAGAGTCCACTTCGATACTTGCTTCAGTGCTGGATGAC 223986 Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATTG 282132 || | | || || || ||||| || || || | ||||| | ||| | | ||| Sbjct 223985 AGGGTCCTCTTGGCTCGCTCACAGGCAGTTCTCAATCTTCTCATGGCACGGGAGTTCTTG 223926 Query 282133 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGA 282190 | || ||| | || |||||||||||||| ||| ||||| | ||| |||| || || Sbjct 223925 CT-CATGTCTTTCTTGTATTTTCTCTTGAATTCTGCAACAAA--ATGGTTTACCAGCCGG 223869 Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 || ||||| ||||| || || | | ||| | ||||| || | | | || | || ||| Sbjct 223868 TTGTCAAAGTCTTCTCCACCAAGATGAGTGTCTCCTGCAGTTGATTTCACCTCAAACAGT 223809 Query 282251 ---CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 ||||| |||| || | || | |||||| || || || |||| |||||| ||| Sbjct 223808 GAGCCATCGTCAATAGTGAGAATGGACACATCAAAAGTGCCGCCTCCCAGATCAAATATA 223749 Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 || |||||| |||| || | ||||| | ||||| || | ||| || ||||| Sbjct 223748 AGCACATTCTTTTCCCCAGACAGGCTCTTATCCAAGCCATAAGCCAGAGCTGCGGCAGTC 223689 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || |||||||| | |||||| || || || || ||||| | ||||||||||| || ||| Sbjct 223688 GGCTCATTAATTACTCTCAACACGTTCAGTCCGGCAATGGTCCCTGCATCTTTCGTTGCT 223629 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487 || || || || |||||||| |||||||| || ||||| || || || |||| || | Sbjct 223628 TGCCTCTGGGAGTCGTTAAAGTATGCAGGGACTGTAATCACTGCGCTGGTGACTTTTTGT 223569 Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547 || | || || ||||||| ||||| || | | | ||| || |||| ||| Sbjct 223568 CCGAGGTAGGCTTCGGCTGTTTCCTTCATCTTGCCCAGTACCATGGAGCTGATTTCTTCG 223509 Query 282548 GGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 282607 | || | | |||| || | || |||| | | ||||| || || Sbjct 223508 GCAGCAAAAGTCTTGCGCTCGCCCTTGTACTCCACTTGGATCTTCGGTTTGTTGTTGTCA 223449 Query 282608 TTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACT---TTGGTCATTAAAA 282664 | |||| || |||||||| |||||| || || || ||| | | ||||| | Sbjct 223448 CTGATAATCTTGAATGGCCACAGTTTCATGTCAGACTGCACAGTAGCATCGTCAT----A 223393 Query 282665 TC-TCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTG 282723 || | || || | | || || || || || || || |||||| | || |||| Sbjct 223392 TCGGCGGCCTATCAGCCTCTTGGCGTCGAAGATTGTGTTCTCTGGATTCAAAGCCACTTG 223333 Query 282724 ATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGT 282783 | ||| |||||||| || | | | || || || || || ||| || ||||| Sbjct 223332 GTTTTTCGCTGCATCGCCGACTAATCGCTCGGTGTCGGTGAAGCCAACGTAACTCGGAGT 223273 Query 282784 TGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTAC 282843 ||| | ||||||||||| || || ||||| || ||||| || ||||| | || ||||| Sbjct 223272 TGTTCTGTTACCTTGATCGTTGGCGATAATCTCCACTTTGCCGTTTTGGAAAACCCCTAC 223213 Query 282844 ACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 ||| | || ||||| || || || |||||||| Sbjct 223212 GCAAGAGTAGGTAGTTCCCAAGTCGATTCCAATAGC 223177 >seq8589 Length=14632 Score = 143 bits (158), Expect = 2e-28 Identities = 349/515 (68%), Gaps = 23/515 (4%) Strand=Plus/Plus Query 161296 TTCATCACGAGCAATAAATTGATTTGATATAATTAGACCAGGCATTACATGCATTTCTCT 161355 ||||||||||| ||| || | || || | ||| |||||||||| | |||| Sbjct 5818 TTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACCAGGCATT------AACCCTCT 5871 Query 161356 AGTTTTTAACCAGAAAATCGAAGCAAATGATCCACTAAAGAAAACGCCTTCTACAATAGA 161415 | |||||||| ||||| ||| ||| | ||| ||||| | ||||| ||| | Sbjct 5872 TTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAAGAATATTCCTTCCACAGCTGC 5931 Query 161416 GAATGCTACTAATTTGTGAGCATATGTCTTATCAGATTTAATCCA-TTTATTACACCAAT 161474 ||||| | | | | | |||| | | |||||| | |||||| |||| | | ||| | Sbjct 5932 AAATGCGATAAGTCTTTCAGCAAAAG---AATCAGACTCAATCCATTTTAATGC-CCATT 5987 Query 161475 CAGC-TTTCTTTTTAATACTTGGCATAGTTTTAATAGAAT-TAATGAGTT-TATTTCTCA 161531 | || |||||||||| | | ||| | || ||||| || ||| | || | |||||| Sbjct 5988 CTGCTTTTCTTTTTATTGC-TGGAAACACTTCAATAGCATGGAATAATTTATCTTTCTCT 6046 Query 161532 AAGCATCATCTTTAACAAATGTAGTCAA-CATTAGTGAATACATTTCTCCATGAGCATTT 161590 | | |||||||| ||| | ||| |||| || || ||||| |||| | |||| ||| Sbjct 6047 A--CCTCATCTTTCACATAAGTA-TCAATCAAAAGAGAATAGGTTTCGCTATGAATATTC 6103 Query 161591 TCCATTGCATA--TTGGAAACCATAAGCACATTCAGCTTCTTTTATTTTCACAACATCAA 161648 ||||| |||| ||| || ||||| | ||| |||||| || ||| ||| || Sbjct 6104 TCCAT--CATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCATATTGCACTTCATTAA 6161 Query 161649 TAAGATTTTCTTTAATATTAGCATTAACAATACCATCAGCTGCCGCAAAAAATGCCAATA 161708 || ||||||| | ||| |||| ||||| || |||| ||| |||||||| || || | Sbjct 6162 CAAAATTTTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCAGCAAAAAAAGCTAAAA 6221 Query 161709 CGTGCATAATAAAATTTCTATCATCATCGCTCAAATGATTATTCCAATCATTCACATCTT 161768 ||| ||||||||| | | ||||| || | || | | ||||| || | | ||||| Sbjct 6222 TATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTCCAGTCTGTGATATCTT 6281 Query 161769 TTGCCAAATCCACTTCTTCAACTGTCCAATAATTT 161803 |||||| | ||||||| | |||||| || || Sbjct 6282 GATGCAAATCTATTTCTTCAGCAGTCCAAAAACTT 6316 >seq10532 Length=317665 Score = 118 bits (130), Expect = 8e-21 Identities = 161/224 (72%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| ||| |||||||| | |||||| | ||| | ||| | ||| || | | Sbjct 234686 ACATCAAAGGTACCACCACCGAGATCAAAGACAAGGATGTTCTTCTCTCCCTCCT---TC 234630 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || | ||||| || | |||||||||||| |||||||| || || | || ||| || Sbjct 234629 TTGTCCATGCCATAGGCGATAGCAGCAGCAGTAGGTTCATTGATGATACGCATGACAGTA 234570 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 ||||| ||||| ||||| || || |||||||| | |||| ||| || || || || Sbjct 234569 AGACCGGCAATGGCACCTGCGTCCTTGGTGGCTTGACGCTGTGCATCATTGAAGTAGGCG 234510 Query 282455 GGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGC 282498 || ||||| | |||||||| || |||| || |||| ||| || Sbjct 234509 GGGACAGTGACAACGGCATGGGTGACTTTCTTGCCAAGATATGC 234466 >seq10661 Length=563269 Score = 93.3 bits (102), Expect = 3e-13 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282722 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 282781 |||| ||| || ||||| || || || | ||||| || | || | ||||| |||| Sbjct 49825 TGATTTTTAGCGGCATCGCCGATGAGTCGCTCTGTGTCAGAGAAAGCTACATAGCTTGGA 49884 Query 282782 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 282841 || |||||||| |||||||| |||||||||||||| || || || | ||| | |||||| Sbjct 49885 GTAGTGCGATTTCCTTGATCGTTCGCAATAATTTCGACCTTTCCGTGTTGGAAAACACCT 49944 Query 282842 ACACAACTAAAAGTTGTTCCTAAATCAATACCAA 282875 ||||| | | || || || | ||| || |||| Sbjct 49945 ACACAGGAATAGGTAGTACCAAGATCGATTCCAA 49978 Score = 89.7 bits (98), Expect = 4e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 282410 CCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACG 282469 ||||||||||| || || || | ||||||||||| || || || ||||| || | ||| Sbjct 49168 CCTGCATCTTTGGTAGCCTGACGCTGTGAATCGTTGAAGTAGGCCGGAACTGTGACTACG 49227 Query 282470 GCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATC 282529 ||||| ||||||| | || | |||||| ||| |||| |||||||| | |||| | Sbjct 49228 GCATCGGTTACTTTTGCCCCTAGATAAGCTTCTGCCGTTTCCTTCATTTTGGTCAAAACC 49287 Query 282530 ATTGATGAAATTTG 282543 || || ||||| || Sbjct 49288 ATGGACGAAATCTG 49301 >seq10237 Length=94279 Score = 91.5 bits (100), Expect = 1e-12 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 282692 AAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 282751 ||||||||||| || ||||| | ||| |||| | ||| || ||||| |||| || | Sbjct 41277 AAAATAGTATTAGTAGGATTCATTGCGACTTGGTTTTTCGCGGCATCGCCAACCAAGCGC 41336 Query 282752 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 282811 ||| || || || | |||||| ||| || || ||||| ||||| || || || || Sbjct 41337 TCTTCATCCGTGAAGGCAACATAGCTTGGCGTGGTACGATTTCCTTGGTCGTTTGCGATG 41396 Query 282812 ATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATA 282871 ||||| || || || | || | || || |||||| | ||||| || | ||| ||| Sbjct 41397 ATTTCGACCTTGCCGTGCTGAAAAACTCCAACACAAGAGTAGGTTGTGCCAAGATCTATA 41456 Query 282872 CCAATAGC 282879 |||||||| Sbjct 41457 CCAATAGC 41464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740099969257704