Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq8589 194 4e-44 seq10803 91.5 3e-13 >seq8589 Length=14632 Score = 194 bits (214), Expect = 4e-44 Identities = 395/580 (68%), Gaps = 19/580 (3%) Strand=Plus/Minus Query 131435 TTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCTGG 131494 ||||||||||| ||||| ||| ||| || ||| || ||| | || || ||| Sbjct 6366 TTTCCAATTAAGCATCATGATATTTGGGAATGGTACAAAAAAATGGAGGCAAGTTTTTGG 6307 Query 131495 ACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAA---AATTAACCTTG 131551 |||| |||||| || ||| || ||||||| || ||| | | |||||| || Sbjct 6306 ACTGCTGAAGAAATAGATTTGCATCAAGATATCACAGACTGGAACACGAAATTAAA--TG 6249 Query 131552 AA--TGAAAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTG 131609 || ||||||| ||||| || | || | || || || || | | ||| || |||| Sbjct 6248 AAGATGAAAAATATTTTATTAAGCATATTTTAGCTTTTTTTGCTGCATCTGACGGGATTG 6189 Query 131610 TTATTGAAAATCTTGTTATTAATTTCATTCAAGAAATTGA-TATTCCTGAAGTAACATCG 131668 | | ||||||| | | ||||| || | ||| | | ||| || |||| | || Sbjct 6188 TGAATGAAAATTTAGCAGAAAATTTTGTTAATGAAGTGCAATATGCC-GAAGCTAAATTT 6130 Query 131669 TTCTACACATTTCAAGCC--GCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGA 131726 ||||| ||||||| | || |||| ||||||||||| | ||||| | |||| Sbjct 6129 TTCTATGGATTTCAAATTATGATGGAGAAT--ATTCATAGCGAAACCTATTCTCTTTTGA 6072 Query 131727 TTGAGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTGATGCTGTAAATAAAT 131786 |||| | | ||| ||| |||| | || ||| |||||||||| ||||| | | | Sbjct 6071 TTGATACTTATGTGAAAGATGAGGTAGAGAAAGATAAATTATTCCATGCTATTGAAGTGT 6012 Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 |||| ||||| |||| |||||||||||||| | ||||||||| | |||||| Sbjct 6011 TTCCAGCAATAAAAAGAAAAGCAGAATGGGCATTAAAATGGATTGAGTCTGATTC----- 5957 Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906 |||| || ||||||| | || ||||| ||| ||||| |||||||| ||||| || | Sbjct 5956 -TTTTGCTGAAAGACTTATCGCATTTGCAGCTGTGGAAGGAATATTCTTCTCAGGAGCGT 5898 Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966 | ||| |||| |||||| | ||||| | || || |||||||| | |||| || || Sbjct 5897 TTTGTTCTATTTTTTGGTTAAAGAAAAGAGGGTTAATGCCTGGTTTAACATTTTCTAACG 5838 Query 131967 AATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 | || || || | ||||||| | ||||| ||| ||||| Sbjct 5837 AGTTAATTTCTCGTGATGAAGGAGTGCATTGTGATTTTGC 5798 >seq10803 Length=2816097 Score = 91.5 bits (100), Expect = 3e-13 Identities = 119/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 110469 CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTT 110528 ||||| | || ||||| ||||||||||| || || || |||| || | ||||||| Sbjct 2064359 CATGCATCACCAACCCTGTTTAACGCAGGCACAAACCGACCACAAATGTCCAGTTGCTTT 2064300 Query 110529 CTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGA-AACTGC 110587 ||||| ||| |||||| ||||||||| || |||| ||| ||| || ||| Sbjct 2064299 CTTCTTACAATGTCTGATGATAGTATTGAAGGAATCTATGGAACTC-TAAGGACTTGTGC 2064241 Query 110588 TCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCA 110629 |||||||||||||| |||||||||||||| || | || || Sbjct 2064240 ACTTATTTCTAAAAATGCTGGAGGAATTGGTGTTAATGTCCA 2064199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186648513954644