Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq10485 131 2e-25 seq10777 122 8e-23 seq10798 111 1e-19 seq10493 102 8e-17 seq10803 93.3 4e-14 >seq10485 Length=261005 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||| || | | | |||||||| || |||||||||||||||| ||| || |||||| Sbjct 97643 AACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCTTC 97584 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||| |||||||| | | |||| ||||||||| ||||| || |||||||| || || Sbjct 97583 GAGTTGTTTACCAGCGAAAATTAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTG 97524 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||||| | ||| | |||||| | ||||| ||||| | || | || || Sbjct 97523 AATTTTAGCTTTCACATTTTCGATCGTATCGCTAGGCTCAACTTCTAGGGTGATAGTCTT 97464 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || ||||| | || || ||||| Sbjct 97463 GCCAGTGAGTGTTTTCACAAAGATTTGCAT 97434 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | |||||||| || |||||||||||||| | ||| || |||||| Sbjct 98099 AACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTAAGGGTTCGGCCATCTTC 98040 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||| ||||| |||| |||| | ||||||||| ||||| || |||||||| || || Sbjct 98039 GAGTTGTTTTCCGGCGAAGATGAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTG 97980 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||||| | || | || ||| | || || ||||| | || | ||||| Sbjct 97979 AATTTTAGCTTTCACATTCTCGATTGTGTCGCTTGGTTCAACTTCTAGAGTGATGGTTTT 97920 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| || || | || || ||||| Sbjct 97919 CCCGGTCAGGGTCTTCACAAAGATTTGCAT 97890 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | |||||||| || |||||||||||||| | ||| || |||||| Sbjct 97871 AACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTAAGGGTTCGGCCATCTTC 97812 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||||| |||| |||| || || ||||| ||||| || |||||||| || || Sbjct 97811 TAGCTGTTTTCCGGCGAAGATGAGTCGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTG 97752 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||||| | || | || ||| | || || ||||| | || | ||||| Sbjct 97751 AATTTTAGCTTTCACATTCTCGATTGTGTCGCTTGGTTCAACTTCTAGAGTGATGGTTTT 97692 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| || || | || || ||||| Sbjct 97691 CCCGGTCAGGGTCTTCACAAAGATTTGCAT 97662 >seq10777 Length=1546546 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||| || | | | |||||||| || |||||||||||||| | ||| || |||||| Sbjct 767675 AACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTTAGGGTTCGGCCATCTTC 767616 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||||| |||| | |||| ||||||||| ||||| || |||||||| || || Sbjct 767615 AAGCTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTG 767556 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||| | | || | || || | ||||| ||||| | || | ||||| Sbjct 767555 AATTTTCGCTTTTACATTCTCGATCGTGTCACTAGGCTCGACTTCTAGGGTGATAGTTTT 767496 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATGA 132125 |||||| || ||||| | || || ||||||| Sbjct 767495 ACCAGTGAGTGTTTTCACAAAGATTTGCATGA 767464 >seq10798 Length=2343873 Score = 111 bits (122), Expect = 1e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| | || ||||| |||| | ||||||||||||| |||||||||||||| | ||| Sbjct 1324520 ACGCAGCCTCAGCACCAAGTGTAGGGTTGACTCTTTTTGGATGTTGTAGTCGCTAAGGGT 1324461 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| ||||| ||||| | | |||| ||||| || || |||||||| ||||| Sbjct 1324460 ACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCTGGAGGAATGCC 1324401 Query 132022 T 132022 | Sbjct 1324400 T 1324400 >seq10493 Length=264610 Score = 102 bits (112), Expect = 8e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||| ||| | | ||||| || || ||||||||||| |||| || || ||||| Sbjct 49492 AACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACTCAGTGTGCGTCCGTCTTC 49433 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||| || || |||| |||| || | ||||| || || || ||||||||||| || Sbjct 49432 GAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGGTCGGGCGGAATGCCTTCTTTGTCCTG 49373 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| |||| | ||| | |||||| |||| || || || | || | ||||| Sbjct 49372 AATTTTCGCCTTCACATTTTCGATCGTATCGCTCGGTTCGACCTCTAAAGTGATGGTTTT 49313 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || |||||||| || | || ||||||||| Sbjct 49312 TCCGGTCAGAGTCTTCACAAAGATCTGCATG 49282 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | ||||| ||| | | ||||| || || |||||||||||||||| || Sbjct 50872 ACGAAGGCGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGTGT 50813 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| || || || |||| | |||| | | |||||| ||||| || || || Sbjct 50812 GCGACCGTCTTCAAGTTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGTGGGATACC 50753 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||| || || || ||||| | || | || || | || || ||||| | Sbjct 50752 CTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTCCAA 50693 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||| |||||||| | |||||||||||| Sbjct 50692 AGTGATGGTCTTTCCAGTGAGAGTTTTGACGAAAATCTGCAT 50651 >seq10803 Length=2816097 Score = 93.3 bits (102), Expect = 4e-14 Identities = 169/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 146890 TGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGA-TACACATTGCTAGTGAA 146948 |||||||| | || ||||| || | |||||| ||||| ||| || | ||| |||||| | Sbjct 2060774 TGATTGACAATCTGGAACTCTCCTGACAGCACGCGTCT-AGAGTAGATATTACTAGTGTA 2060832 Query 146949 AGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGC 147008 ||||||| ||| || |||||||| | ||| || || |||| || || |||||| ||| Sbjct 2060833 TGGCTCAATAGATTCGTTATTGCCAAGTATCTGAGCAGTGGACGCCGTGGGCATGGGCGC 2060892 Query 147009 CACCA--ACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAG 147066 | || | | || || || || || | | || || | ||||| | | |||| Sbjct 2060893 AATCAGTAGACTG--TTGCGGAGGCCATGTTCCTTGACCTTCTTCTTCAGCGCCTCCCAG 2060950 Query 147067 TCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCG 147126 ||||||| ||||| || || ||||| | |||||||| | | ||| | |||||| Sbjct 2060951 TCCCACAGGTTTGAGGGAGTGACATTCCAGAGATCGTACTGCAATAACCCTTGGCTGGCG 2061010 Query 147127 GGA 147129 ||| Sbjct 2061011 GGA 2061013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476546833657440