Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq10493 114 1e-20 seq10485 109 5e-19 >seq10493 Length=264610 Score = 114 bits (126), Expect = 1e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||||||||| | ||||| || || | ||||||||| | ||||| | || |||||| | Sbjct 49279 CAACATGCAGATCTTTGTGAAGACTCTGACCGGAAAAACCATCACTTTAGAGGTCGAACC 49338 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | |||||| ||||| | || || |||||| || ||||| || || |||||||| Sbjct 49339 GAGCGATACGATCGAAAATGTGAAGGCGAAAATTCAGGACAAAGAAGGCATTCCGCCCGA 49398 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 || |||||||| || | || |||||| ||||||||||| | | | | || || || Sbjct 49399 CCAACAAAGACTTATCTTCGCCGGCAAGCAACTCGAAGACGGACGCACACTGAGTGACTA 49458 Query 25351 CAATATTCAAAAAGAATCCACCATTCAT 25378 ||| || || || || ||||| ||||| Sbjct 49459 CAACATCCAGAAGGAGTCCACACTTCAT 49486 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | || ||||| | ||||| | ||||| ||| | | Sbjct 50423 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCAAGT 50482 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || ||| || || || ||||||||||| || || || ||| Sbjct 50483 GACACAATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAG 50542 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| | || | || |||||| ||||| ||||| | | | | | ||||| ||||| Sbjct 50543 CAAAGGTTGATCTTCGCCGGCAAGCAACTTGAAGACGGTCGCACACTGAGCGACTACAAC 50602 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || || || ||||| ||||| | || || | |||||||||||| Sbjct 50603 ATCCAGAAGGAGTCCACACTTCATCTGGTTCTACGTCTGAGAGGAGGAA 50651 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| | || ||||| | ||||| | ||||| ||| | | Sbjct 50195 ATGCAGATTTTCGTCAAAACTCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCAAGT 50254 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || ||| || || || ||||||||||| || || || ||| Sbjct 50255 GACACAATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAG 50314 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| | || | || |||||| ||||| ||||| | | | | | ||||| ||||| Sbjct 50315 CAAAGGTTGATCTTCGCCGGCAAGCAACTTGAAGACGGTCGCACACTGAGCGACTACAAC 50374 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 || || || || ||||| ||||| Sbjct 50375 ATCCAGAAGGAGTCCACACTTCAT 50398 >seq10485 Length=261005 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | ||||| ||| | ||||| | ||||| ||| | | | Sbjct 97890 ATGCAAATCTTTGTGAAGACCCTGACCGGGAAAACCATCACTCTAGAAGTTGAACCAAGC 97949 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || ||| |||||| || || || || || || || || || Sbjct 97950 GACACAATCGAGAATGTGAAAGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 98009 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | |||| | || ||| |||||||||||||||| ||| | ||||| ||||| Sbjct 98010 CAGCGTTTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTTAGCGACTACAAC 98069 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 || || ||||| || || |||| || || || | | ||||||||||| Sbjct 98070 ATCCAGAAAGAGTCGACTCTTCACTTGGTTCTACGTCTCAGAGGAGGAAA 98119 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||| | || || || | ||||| | ||||| || | | | Sbjct 97434 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACTATCACCCTAGAAGTTGAGCCTAGC 97493 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| |||||| || || || || || || || || || Sbjct 97494 GATACGATCGAAAATGTGAAAGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 97553 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | |||| || || |||||||||||||||| ||| | ||||| ||||| Sbjct 97554 CAGCGTTTAATTTTCGCTGGTAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACAAC 97613 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || ||||| || ||| |||| | || || | | |||||||||| Sbjct 97614 ATCCAGAAAGAGTCGACCCTTCACCTGGTTCTACGTCTCAGAGGAGGAA 97662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445034290001280