Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_027204.1 Length=194701 Score E Sequences producing significant alignments: (Bits) Value seq9558 82.4 1e-10 >seq9558 Length=35122 Score = 82.4 bits (90), Expect = 1e-10 Identities = 164/243 (67%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 176357 CAGTGTCGGCAAAGCCAACGGTTCGCGTTCAAGCTGTTCCTTCACCTGATCGAAGTGATT 176416 ||| ||||| | || || || | ||| | ||||| || ||||| |||| || || Sbjct 540 CAGCGTCGGGTAGGCGAAGGGCTGGCGCGCCAGCTGGGTCTCGACCTGGGCGAAATGGTT 481 Query 176417 GTTATAGATGTGGGTATCACCAAGGTTGCCGATCAGTTCCCCGACTTCCAAGCCGCATTC 176476 ||| ||||||||| || || | | | || | || || || | || | |||||| Sbjct 480 GTTGTAGATGTGGCAGTCGCCGCCGGTCCAGACGAAGTCACCCACCTGCAGGTCGCATTG 421 Query 176477 CAGCGCGATCAGATGTGTCAGGAGTGCGTAAGAGGCGATGTTGAATGGAAGCCCCAAGAA 176536 | | || | || || ||||| | |||||| |||||||||||| |||| |||| ||| Sbjct 420 CTGGGCCAGCATGTGGGTCAGCAATGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAA 361 Query 176537 GACGTCCACGGACCGCTGATTCCAAAGGCAGGACAGTTTCCCGTTGCGGACATAGAACTG 176596 || |||| || ||||| | | |||| || || |||| | ||||||||||| Sbjct 360 GATGTCCGCGCTGCGCTGGTACAGCTGGCAACTGAGCTTGCCGTCGGCCACATAGAACTG 301 Query 176597 GAA 176599 ||| Sbjct 300 GAA 298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622831075302240