Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq8589 271 1e-67 seq10743 120 4e-22 >seq8589 Length=14632 Score = 271 bits (300), Expect = 1e-67 Identities = 414/584 (71%), Gaps = 12/584 (2%) Strand=Plus/Plus Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679 || || |||||||| | || ||||| | | |||||| |||||||||||||| | ||| Sbjct 5798 GCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACCA 5857 Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATG 39739 ||||||| || | || || | |||||| || | | ||| | ||| || ||||| || Sbjct 5858 GGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAAGAATATT 5917 Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCAC 39799 ||||| || ||||||||||| | |||||| || | || | |||| | ||||| Sbjct 5918 CCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAAA---GAATCAGACTCAATCCAT 5974 Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 || |||||| || ||||| | |||| || | ||| ||||||| || | Sbjct 5975 TTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACACTTCAATAGCATGGAATAAT 6034 Query 39860 TAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAA 39919 | || ||| || | |||||| ||||| ||||| || || ||| ||| |||| | Sbjct 6035 TTATCTTTCTCTACCTCATCTTTCACATAAGTATCAATCAAAAGAGAATAGGTTTCGCTA 6094 Query 39920 TGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACC 39979 || || || || ||| || |||||||| || ||| || | ||||| | | ||| || Sbjct 6095 TGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCATATTGCACT 6154 Query 39980 TC-TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAA 40038 || | |||||||| |||| || |||||||||||||| || || ||| || |||||||| Sbjct 6155 TCATTAACAAAAT-TTTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCAGCAAAAAA 6213 Query 40039 TGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT---TATTCCAGTCATT 40095 || || | ||| |||||||||||||||||||| | |||| | |||||||| | Sbjct 6214 AGCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTCCAGTCTGT 6273 Query 40096 GATATCTTTTGAT--ATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTG 40153 |||||| ||||| | ||||| ||||||||| |||||||| ||||| |||||| Sbjct 6274 GATATC--TTGATGCAAATCTATTTCTTCAGCAGTCCAAAAACTTGCCTCCATTTTTTTG 6331 Query 40154 TACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 ||| | ||| |||||| ||| | ||||||||||| ||||| Sbjct 6332 TACCATTCCCAAATATCATGATGCTTAATTGGAAAAATGACAAA 6375 >seq10743 Length=1036592 Score = 120 bits (132), Expect = 4e-22 Identities = 170/237 (72%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 39694 CTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGC 39753 ||| || ||||| || ||||||||||| || ||||||||||||||||| ||||| || || Sbjct 63022 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 63081 Query 39754 AAATGCAACAAGTCTCTCTCCGTAACTTG-TATCATTATGT--ATCCACTTCTGTGCCCA 39810 ||| || | || ||||| || | || | || || ||||| ||| | ||||| Sbjct 63082 AAAGGCGATAATCCTCTCGCCAAATGATGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCA 63141 Query 39811 ATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTC 39870 | || |||||| | |||||||||||||| || |||||||| || |||| |||||| Sbjct 63142 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 63201 Query 39871 ATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTT 39927 | | ||||| | | ||||| | || || ||||| || || |||||||| Sbjct 63202 CGCCTTGTCTTTGATCAGGCTCTCTATCAGAAGGCTGTACATCTCAGAGTGGATGTT 63258 Score = 114 bits (126), Expect = 2e-20 Identities = 168/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 39694 CTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGC 39753 ||| || ||||| || ||||||||||| || ||||||||||||||||| ||||| || || Sbjct 107837 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 107896 Query 39754 AAATGCAACAAGTCTCTCTCCGTAACTTG---TATCATTATGTATCCACTTCTGTGCCCA 39810 ||| || | || ||||| || | || | | || ||||| ||| | ||||| Sbjct 107897 AAAGGCGATAATCCTCTCGCCAAATGATGCTCTCTGGGGATTGATCCAGTTCAGAGCCCA 107956 Query 39811 ATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTC 39870 | || |||||| | |||||||||||||| || |||||||| || |||| |||||| Sbjct 107957 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 108016 Query 39871 ATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTT 39927 | | ||||| | | || || | || || ||||| || || |||||||| Sbjct 108017 TGCCTTGTCTTTGATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 108073 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 39929 TCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAA 39988 ||||| || ||||| || ||||| || || || || |||| ||| ||||| ||| ||| Sbjct 63488 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 63547 Query 39989 AATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACA 40048 || | || | | ||||||||| || || ||||| || || ||||| |||||||||||| Sbjct 63548 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 63607 Query 40049 TG 40050 || Sbjct 63608 TG 63609 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39929 TCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAA 39988 ||||| || ||||| || ||||| || || || || |||| ||| ||||| ||| ||| Sbjct 76525 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 76466 Query 39989 AATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACA 40048 || | || | | ||||||||| || || ||||| || || ||||| |||||||||||| Sbjct 76465 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 76406 Query 40049 TG 40050 || Sbjct 76405 TG 76404 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39929 TCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAA 39988 ||||| || ||||| || ||||| || ||||| || |||| ||| ||||| ||| || Sbjct 81418 TCAATAGCAATCTGGAAGCCGTAGAAGCATCTGGCCTCAGGAATCTGTACTTCTTGACTG 81359 Query 39989 AATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACA 40048 || | || | | ||||||||| || || ||||| || || ||||| |||||||||||| Sbjct 81358 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 81299 Query 40049 TG 40050 || Sbjct 81298 TG 81297 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39929 TCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAA 39988 ||||| || ||||| || ||||| || || || || |||| ||| ||||| ||| ||| Sbjct 89773 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 89714 Query 39989 AATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACA 40048 || | || | | ||||||||| || || ||||| || || ||||| |||||||||||| Sbjct 89713 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 89654 Query 40049 TG 40050 || Sbjct 89653 TG 89652 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 39929 TCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAA 39988 ||||| || ||||| || ||||| || || || || |||| ||| ||||| ||| || Sbjct 108302 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACTG 108361 Query 39989 AATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACA 40048 || | || | | ||||||||| || || ||||| || || ||||| |||||||||||| Sbjct 108362 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 108421 Query 40049 TG 40050 || Sbjct 108422 TG 108423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686816032966560