Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq8589 295 5e-75 >seq8589 Length=14632 Score = 295 bits (326), Expect = 5e-75 Identities = 417/583 (72%), Gaps = 10/583 (2%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||||||| | ||||||| || ||| || |||||||||| |||| Sbjct 6375 TTTGTCATTTTTCCAATTAAGCATCATGATATTTGGGAATGGTACAAAAAAATGGAGGCA 6316 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGC---A 43816 |||||||| || |||||| | |||||| | |||| | || | |||| | | Sbjct 6315 AGTTTTTGGACTGCTGAAGAAATAGATTTGCATCAAGATATCACAGACTGGAACACGAAA 6256 Query 43817 TTAAAACCACAAGAAAAACATTTTAT--ATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874 ||||| | | |||||| ||||||| | | | |||| || ||||||||||| | Sbjct 6255 TTAAATGAAGATGAAAAATATTTTATTAAGCATA--TTTTAGCTTTTTTTGCTGCATCTG 6198 Query 43875 ACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAG 43934 ||||||| || ||||||||||| | |||| | ||||| |||| | |||| Sbjct 6197 ACGGGATTGTGAATGAAAATTTAGCAGAAAATTTTGTTAATGAAGTGCAATATGCCGAAG 6138 Query 43935 CACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTC 43994 | || ||| ||||| ||||||||| || || ||||||||| |||| || || Sbjct 6137 CTAAATTTTTCTATGGATTTCAAATTATGATGGAGAATATTCATAGCGAAACCTATTCTC 6078 Query 43995 TTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAG 44054 || |||| ||||| || | ||||||| | ||||| || ||| || |||| || | Sbjct 6077 TTTTGATTGATACTTATGTGAAAGATGAGGTAGAGAAAGATAAATTATTCCATGCTATTG 6018 Query 44055 AAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATG 44114 || | || || || ||| |||||||| ||||| | |||||||| | || || Sbjct 6017 AAGTGTTTCCAGCAATAAAAAGAAAAGCAGAATGGGCATTAAAATGGATTGAGTC---TG 5961 Query 44115 ATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174 ||||||||| ||| ||||| |||| ||||||| ||||||||| || ||||| |||||| Sbjct 5960 ATTCTTTTGCTGAAAGACTTATCGCATTTGCAGCTGTGGAAGGAATATTCTTCTCAGGAG 5901 Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234 ||||| | || ||||||||||||||| |||| || |||||||| || || ||||| | Sbjct 5900 CGTTTTGTTCTATTTTTTGGTTAAAGAAAAGAGGGTTAATGCCTGGTTTAACATTTTCTA 5841 Query 44235 ATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277 | |||||||| |||||||||||| | ||||| |||||||| Sbjct 5840 ACGAGTTAATTTCTCGTGATGAAGGAGTGCATTGTGATTTTGC 5798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397403665478020