Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq10485 114 8e-21 seq10777 111 1e-19 seq10493 111 1e-19 >seq10485 Length=261005 Score = 114 bits (126), Expect = 8e-21 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||||| || ||||| ||| || || ||||| || || | Sbjct 98116 CCTCCTCTGAGACGTAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTA 98057 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | ||||| |||||||| ||||| || || |||||||||||||| || || Sbjct 98056 AGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAGATGAAACGCTGTTGGTCTGGGGGA 97997 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | || ||||||||| ||| ||| | ||| || | |||||||| | | | || | Sbjct 97996 ATGCCTTCCTTGTCT-TGAATTTTAGCTTTCACATTCTCGATTGTGTCGCTTGGT-TCAA 97939 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||| ||||| | || |||||||| || ||||| Sbjct 97938 CTTCTAGAGTGATGGTTTTCCCGGTCAGGGTCTTCACAAAGATTTGCAT 97890 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | |||| || || || ||| || || ||||| || || Sbjct 97660 CCTCCTCTGAGACGTAGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTC 97601 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | ||||| ||||||||||| || || ||||||||||||||||| || || Sbjct 97600 AGGGTTCGGCCATCTTCGAGTTGTTTACCAGCGAAAATTAAACGCTGTTGGTCTGGGGGA 97541 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCT---CTC 34655 | || ||||||||| ||| ||| | ||| || | || || ||||| ||| Sbjct 97540 ATGCCTTCCTTGTCT-TGAATTTTAGCTTTCACATTTTCGATCGT---ATCGCTAGGCTC 97485 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | ||| || || || || || | ||||||||||| || ||||| Sbjct 97484 AACTTCTAGGGTGATAGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 97434 >seq10777 Length=1546546 Score = 111 bits (122), Expect = 1e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | |||| || || || ||| || || ||||| || || Sbjct 767692 CCTCCTCGGAGACGTAGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTT 767633 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | |||||||| ||||| ||||| || ||||||||||||||||| || || Sbjct 767632 AGGGTTCGGCCATCTTCAAGCTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGGGGA 767573 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| | ||| || | || ||||| ||| || Sbjct 767572 ATGCCTTCCTTGTCT-TGAATTTTCGCTTTTACATTCTCGATCGTGTCACTAGGCTCGAC 767514 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 ||| | ||| || |||||||| || | ||||||||||| || |||||| ||| Sbjct 767513 TTCTAGGGTGATAGTTTTACCAGTGAGTGTTTTCACAAAGATTTGCATGATGA 767461 >seq10493 Length=264610 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | |||| ||| || ||| |||||| || ||||| || || Sbjct 50877 CCTCCACGAAGGCGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTC 50818 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || ||||||||||||| || |||||||| || || | ||||||||| || || Sbjct 50817 AGTGTGCGACCGTCTTCAAGTTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGTGGG 50758 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||| |||||| |||| || | ||| || | ||||||||| | | | || | Sbjct 50757 ATACCCTCTTTGTCTTGGATC-TTGGCTTTCACATTCTCAATTGTGTCACTTGGT-TCAA 50700 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || || || || | ||||| || ||||||||||| Sbjct 50699 CTTCCAAAGTGATGGTCTTTCCAGTGAGAGTTTTGACGAAAATCTGCAT 50651 Score = 102 bits (112), Expect = 5e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||| ||| || ||| |||||| || ||||| || || Sbjct 50421 CCTCCACGAAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTC 50362 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || ||||||||||||| || ||||| || || || | || ||||| || || Sbjct 50361 AGTGTGCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGG 50302 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||| |||||| |||| || | ||| || | ||||||||| | | | || | Sbjct 50301 ATACCCTCTTTGTCTTGGATC-TTGGCTTTCACATTCTCAATTGTGTCACTTGGT-TCAA 50244 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || || || || | ||||| || ||||||||||| Sbjct 50243 CTTCCAAAGTGATGGTCTTTCCAGTGAGAGTTTTGACGAAAATCTGCAT 50195 Score = 102 bits (112), Expect = 5e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | |||| ||| || ||| |||||| || ||||| || || Sbjct 50649 CCTCCTCTCAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTC 50590 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || ||||||||||||| || ||||| || || || | || ||||| || || Sbjct 50589 AGTGTGCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGG 50530 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||| |||||| |||| || | ||| || | ||||||||| | | | || | Sbjct 50529 ATACCCTCTTTGTCTTGGATC-TTGGCTTTCACATTCTCAATTGTGTCACTTGGT-TCAA 50472 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || || || || | || || || ||||||||||| Sbjct 50471 CTTCCAAAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 50423 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||| ||| || ||| |||||| || ||||| || || Sbjct 49737 CCTCCACGAAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACTC 49678 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || ||||||||||||| || ||||| || || || | || ||||| || || Sbjct 49677 AGTGTGCGTCCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGG 49618 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||| |||||| |||| || | ||| || | ||||||||| | | | || | Sbjct 49617 ATACCCTCTTTGTCTTGGATC-TTGGCTTTCACATTCTCAATTGTGTCACTTGGT-TCAA 49560 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || || || || | || || || ||||||||||| Sbjct 49559 CTTCCAAAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 49511 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | |||| ||| || ||| |||||| || ||||| || || Sbjct 49965 CCTCCACGAAGGCGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTC 49906 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || ||||||||||||| || ||||| || || || | || ||||| || || Sbjct 49905 AGTGTGCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGG 49846 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||| |||||| |||| || | ||| || | ||||||||| | | | || | Sbjct 49845 ATACCCTCTTTGTCTTGGATC-TTGGCTTTCACATTCTCAATTGTGTCACTTGGT-TCAA 49788 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || || || || | || || || ||||||||||| Sbjct 49787 CTTCCAAAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 49739 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | |||| ||| || ||| |||||| || ||||| || || Sbjct 50193 CCTCCACGAAGGCGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTC 50134 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || ||||||||||||| || ||||| || || || | || ||||| || || Sbjct 50133 AGTGTGCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGG 50074 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||| |||||| |||| || | ||| || | ||||||||| | | | || | Sbjct 50073 ATACCCTCTTTGTCTTGGATC-TTGGCTTTCACATTCTCAATTGTGTCACTTGGT-TCAA 50016 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || || || || | || || || ||||||||||| Sbjct 50015 CTTCCAAAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 49967 Score = 87.8 bits (96), Expect = 1e-12 Identities = 163/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||| ||| || ||| |||||| || ||||| || || Sbjct 49509 CCTCCACGAAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACTC 49450 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || ||||||| ||||| || ||||| || || | | |||||||| ||||| Sbjct 49449 AGTGTGCGTCCGTCTTCGAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGGTCGGGCGGA 49390 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCT-TCGCTCTCCA 34657 | || || ||||| ||| ||| | || || | || || || ||| | || | Sbjct 49389 ATGCCTTCTTTGTCC-TGAATTTTCGCCTTCACATTTTCGATCGTATCGCTCGGT-TCGA 49332 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 | || | || || ||||| ||||| | || |||||||| ||||||||||||| Sbjct 49331 CCTCTAAAGTGATGGTTTTTCCGGTCAGAGTCTTCACAAAGATCTGCATGTTGA 49278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314688158373332