Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq2361 208 3e-49 seq9826 105 3e-18 >seq2361 Length=2839 Score = 208 bits (230), Expect = 3e-49 Identities = 245/331 (74%), Gaps = 3/331 (1%) Strand=Plus/Minus Query 7279 GGTGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATG 7338 || |||||||||||||||||||| || | | ||| ||||||||||| |||||| || Sbjct 2292 GGGGTTAACAAAGTCATTCTGGTCGGCACCTGCGGACAGGACCCGGAAACTCGCTACCTG 2233 Query 7339 CCCAACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAG 7398 || | |||||| ||||| |||||| | | ||| || ||||||||| |||| |||||| Sbjct 2232 CCAAGCGGCAACGCGGTCACCAACCTGAGCCTGGCGACCAGCGAGCAGTGGACCGACAAG 2173 Query 7399 CAGACCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGCCTG 7458 ||||| |||||| | || |||||| ||||| ||| | | ||||| | Sbjct 2172 CAGACTGGCCAGAAGGTCGAGAAAACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGTT 2113 Query 7459 GCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGCCTG 7518 || ||||| || ||||||||||||||||| ||||| ||||| || |||| |||| ||| Sbjct 2112 GCCGAGATTGCTGGCGAGTACCTGCGCAAAGGTTCGCAGGTATATATCGAGGGCAAGCTG 2053 Query 7519 CGCACCCGCAAGTGGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGTAATCGTC 7578 | |||||| |||| || | |||||| | || ||||||||||| | |||||| Sbjct 2052 CAGACCCGCGAGTG---GGAAAAAGACGGCGTTAAGCGCTACACCACCGAAATCATCGTC 1996 Query 7579 GACATGCACGGACAGATGCAGATGCTTGGCG 7609 |||||||| || |||||| ||||||||| Sbjct 1995 GACATGCAGGGCACCATGCAGCTGCTTGGCG 1965 >seq9826 Length=41569 Score = 105 bits (116), Expect = 3e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 53612 CCGTCCCGGTTCTTCCGGATCAGGATTTCGCCGATACCCTTCCTGTCGCTGTTCGGGAAA 53671 |||| || | ||| | ||| | ||||||| | | ||||| ||| | | ||| | Sbjct 439 CCGTTACGCTGCTTGCCGATAATGATTTCGGCCACGCCCTTGTACTCGGTCTCGGGGTGA 380 Query 53672 TAGACTTCATCGCGGTACACGAACATGACGATGTCGGCGTCTTGCTCAATGGCGCCGGAC 53731 || || || |||||||| |||||||||| |||||||||||| ||||| || || ||||| Sbjct 379 TACACCTCGTCGCGGTAAACGAACATGATGATGTCGGCGTCCTGCTCGATTGCCCCGGAT 320 Query 53732 TCGCGCAGGTCGCTGAGGACCGGACGCTTGTCGGGGCGAGACTCGCACCCTCGGTTTAGC 53791 ||||||| |||| | || ||| || |||| ||||| ||| || ||||| ||| Sbjct 319 TCGCGCAAGTCGGAGTTGATCGGGCGTTTGTTAGGGCGCTGCTCCAGGCCACGGTTAAGC 260 Query 53792 TGGCAGAGGGGAAGCACAGGACA 53814 || | |||| || ||| || || Sbjct 259 TGCGACAGGGCAATCACCGGGCA 237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194794205183688