Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq10493 165 2e-35 seq10485 163 7e-35 seq10777 129 1e-24 seq10798 102 2e-16 >seq10493 Length=264610 Score = 165 bits (182), Expect = 2e-35 Identities = 176/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | ||| || || ||||| |||||||| || |||||||| || || || Sbjct 49507 TCCACGAAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACTCAG 49448 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||| ||||| || |||||||| ||||||||||| | ||||||||| || |||| Sbjct 49447 TGTGCGTCCGTCTTCGAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGGTCGGGCGGAAT 49388 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAAC 211066 ||||| |||||||| || || ||||| |||||||| || || ||| ||| || Sbjct 49387 GCCTTCTTTGTCCTGAATTTTCGCCTTCACATTTTCGATCGTATC---GCTCGGTTCGAC 49331 Query 211067 CTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| | |||||| || ||||| || |||||||| ||||| | |||||| || Sbjct 49330 CTCTAAAGTGATGGTTTTTCCGGTCAGAGTCTTCACAAAGATCTGCATGTT 49280 Score = 156 bits (172), Expect = 1e-32 Identities = 170/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | ||| || || ||||| |||||||| || |||||||| || || || Sbjct 49735 TCCACGAAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACTCAG 49676 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||| ||||| || |||||||| |||||||| | | ||| ||||| || || | Sbjct 49675 TGTGCGTCCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGGAT 49616 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || || ||||| |||||||| |||||| || || || |||||| |||||| || Sbjct 49615 ACCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTC 49556 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | |||||| |||||||| ||||||||||| || || | ||||||| Sbjct 49555 CAAAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 49510 Score = 150 bits (166), Expect = 4e-31 Identities = 169/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | ||| || || ||||| |||||||| || |||||||| || || || Sbjct 49963 TCCACGAAGGCGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTCAG 49904 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | || ||||| || |||||||| |||||||| | | ||| ||||| || || | Sbjct 49903 TGTGCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGGAT 49844 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || || ||||| |||||||| |||||| || || || |||||| |||||| || Sbjct 49843 ACCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTC 49784 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | |||||| |||||||| ||||||||||| || || | ||||||| Sbjct 49783 CAAAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 49738 Score = 150 bits (166), Expect = 4e-31 Identities = 169/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | ||| || || ||||| |||||||| || |||||||| || || || Sbjct 50191 TCCACGAAGGCGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTCAG 50132 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | || ||||| || |||||||| |||||||| | | ||| ||||| || || | Sbjct 50131 TGTGCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGGAT 50072 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || || ||||| |||||||| |||||| || || || |||||| |||||| || Sbjct 50071 ACCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTC 50012 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | |||||| |||||||| ||||||||||| || || | ||||||| Sbjct 50011 CAAAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 49966 Score = 143 bits (158), Expect = 6e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||| || || ||||| |||||||| || |||||||| || || || || | || || Sbjct 50635 TAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGTGTGCGACCGTC 50576 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||| || |||||||| |||||||| | | ||| ||||| || || | || || ||||| Sbjct 50575 TTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGGATACCCTCTTTGTC 50516 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 |||||||| |||||| || || || |||||| |||||| || | |||||| || Sbjct 50515 TTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTCCAAAGTGATGGT 50456 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||| ||||||||||| || || | ||||||| Sbjct 50455 CTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 50422 >seq10485 Length=261005 Score = 163 bits (180), Expect = 7e-35 Identities = 167/217 (77%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||| || | ||||||||| |||||||| |||||||| || || |||||| | ||||| Sbjct 97874 TAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTAAGGGTTCGGCCATC 97815 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||| ||||| || || |||||||| || ||||||||||| || |||| ||||||||||| Sbjct 97814 TTCTAGCTGTTTTCCGGCGAAGATGAGTCGTTGTTGGTCTGGGGGAATGCCTTCCTTGTC 97755 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGAT 211078 || || || |||||| || ||||| ||||| ||| |||||| || |||||||| Sbjct 97754 TTGAATTTTAGCTTTCACATTCTCGATTGTGTC---GCTTGGTTCAACTTCTAGAGTGAT 97698 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || || ||||| ||||| | |||||| Sbjct 97697 GGTTTTCCCGGTCAGGGTCTTCACAAAGATTTGCATT 97661 Score = 149 bits (164), Expect = 1e-30 Identities = 164/217 (76%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||| || | ||||||||| |||||||| |||||||| || || |||||| | ||||| Sbjct 98102 TAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTAAGGGTTCGGCCATC 98043 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||| || || || || |||||||| | || |||||||| || |||| ||||||||||| Sbjct 98042 TTCGAGTTGTTTTCCGGCGAAGATGAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTC 97983 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGAT 211078 || || || |||||| || ||||| ||||| ||| |||||| || |||||||| Sbjct 97982 TTGAATTTTAGCTTTCACATTCTCGATTGTGTC---GCTTGGTTCAACTTCTAGAGTGAT 97926 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || || ||||| ||||| | |||||| Sbjct 97925 GGTTTTCCCGGTCAGGGTCTTCACAAAGATTTGCATT 97889 Score = 136 bits (150), Expect = 9e-27 Identities = 161/217 (74%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||| || |||||||| || |||||||| |||||||| || || ||||| | ||||| Sbjct 97646 TAGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATC 97587 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||| || || || || ||||| || | || |||||||| || |||| ||||||||||| Sbjct 97586 TTCGAGTTGTTTACCAGCGAAAATTAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTC 97527 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGAT 211078 || || || |||||| |||||||| || || ||| ||||| || || ||||| Sbjct 97526 TTGAATTTTAGCTTTCACATTTTCGATCGTATC---GCTAGGCTCAACTTCTAGGGTGAT 97470 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || ||||| || || ||||| | |||||| Sbjct 97469 AGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCATT 97433 >seq10777 Length=1546546 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | ||| || |||||||| || |||||||| |||||||| || || ||||| Sbjct 767686 CGGAGACGTAGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTTAGGGTT 767627 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| ||||| || || ||||| || | || |||||||| || |||| ||| Sbjct 767626 CGGCCATCTTCAAGCTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGGGGAATGCCT 767567 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| || || || ||| || || ||||| |||||| || || || || Sbjct 767566 TCCTTGTCTTGAATTTTCGCTTTTACATTCTCGATCGTGTCACTAGGCTCGACTTCTAGG 767507 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| || || ||||| | ||||| Sbjct 767506 GTGATAGTTTTACCAGTGAGTGTTTTCACAAAGATTTGCAT 767466 >seq10798 Length=2343873 Score = 102 bits (112), Expect = 2e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || || || || | ||| || || ||||||||||||||||| || || |||||| Sbjct 1324520 ACGCAGCCTCAGCACCAAGTGTAGGGTTGACTCTTTTTGGATGTTGTAGTCGCTAAGGGT 1324461 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 | |||||||| |||||||| || || |||||||| ||||| ||||| ||||||| Sbjct 1324460 ACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCTGGAGGAA 1324405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158991542935460