Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq10777 104 2e-17 seq10493 100 2e-16 seq10485 95.1 1e-14 >seq10777 Length=1546546 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | |||| |||| || || || |||||| || || || || ||| Sbjct 767692 CCTCCTCGGAGACGTAGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTT 767633 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| | || ||||||||||| || || || || | |||||| ||||| | ||| Sbjct 767632 AGGGTTCGGCCATCTTCAAGCTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGGGGA 767573 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || ||||| |||||| ||| | || | | ||| || || | ||| || Sbjct 767572 ATGCCTTCCTTGTCTTGAATTTTCGCTTTTACATTCTCGATCGTGTCACTAGGCTCGACT 767513 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | |||||| |||| || || || ||||| |||||||||||||| Sbjct 767512 TCTAGGGTGATAGTTTTACCAGTGAGTGTTTTCACAAAGATTTGCAT 767466 >seq10493 Length=264610 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 |||| |||| ||| || ||| ||| || || || || || || ||||| ||| || Sbjct 49497 CGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACTCAGTGTGCGTCCG 49438 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || || || ||||| || || ||||| | || ||||||| || | || |||||| Sbjct 49437 TCTTCGAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGGTCGGGCGGAATGCCTTCTTTG 49378 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| |||||| || | | | | ||||||||||| || || || | ||||| Sbjct 49377 TCCTGAATTTTCGCCTTCACATTTTCGATCGTATCGCTCGGTTCGACCTCTAAAGTGATG 49318 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||||| ||||| || || |||||||| ||||| || Sbjct 49317 GTTTTTCCGGTCAGAGTCTTCACAAAGATCTGCATGTT 49280 >seq10485 Length=261005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | |||| |||| || || || |||||| || || || || ||| Sbjct 97660 CCTCCTCTGAGACGTAGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTC 97601 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| | || || || ||||| || || || || | |||||| ||||| | ||| Sbjct 97600 AGGGTTCGGCCATCTTCGAGTTGTTTACCAGCGAAAATTAAACGCTGTTGGTCTGGGGGA 97541 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || ||||| ||||| ||| | | | | ||||||||| | ||| || Sbjct 97540 ATGCCTTCCTTGTCTTGAATTTTAGCTTTCACATTTTCGATCGTATCGCTAGGCTCAACT 97481 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | |||||| | || || || || ||||| |||||||||||||| Sbjct 97480 TCTAGGGTGATAGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 97434 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | |||| ||||| || || || |||||| || || || || ||| | Sbjct 97888 CCTCCTCTGAGACGTAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTA 97829 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| | || || |||||||| || || || || || || || ||||| | ||| Sbjct 97828 AGGGTTCGGCCATCTTCTAGCTGTTTTCCGGCGAAGATGAGTCGTTGTTGGTCTGGGGGA 97769 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || ||||| ||||| ||| | || | | || ||||| | || || Sbjct 97768 ATGCCTTCCTTGTCTTGAATTTTAGCTTTCACATTCTCGATTGTGTCGCTTGGTTCAACT 97709 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| |||| || ||||| || || |||||||||||||| Sbjct 97708 TCTAGAGTGATGGTTTTCCCGGTCAGGGTCTTCACAAAGATTTGCAT 97662 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | |||| ||||| || || || |||||| || || || || ||| | Sbjct 98116 CCTCCTCTGAGACGTAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTA 98057 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| | || || || ||||| || || || || | |||||| ||||| | ||| Sbjct 98056 AGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAGATGAAACGCTGTTGGTCTGGGGGA 97997 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || ||||| ||||| ||| | || | | || ||||| | || || Sbjct 97996 ATGCCTTCCTTGTCTTGAATTTTAGCTTTCACATTCTCGATTGTGTCGCTTGGTTCAACT 97937 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| |||| || ||||| || || |||||||||||||| Sbjct 97936 TCTAGAGTGATGGTTTTCCCGGTCAGGGTCTTCACAAAGATTTGCAT 97890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429489040120052