Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq10493 156 3e-33 seq10777 132 3e-26 seq10485 132 3e-26 >seq10493 Length=264610 Score = 156 bits (172), Expect = 3e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| ||||| ||||| ||||| || |||||| | |||||||| | | Sbjct 50650 AATGCAGATTTTCGTCAAAACTCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCAAG 50709 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | ||| | || || |||||||| ||| | || ||||| | Sbjct 50710 TGACACAATTGAGAATGTGAAAGC-CAAGATCCAAGACAAAGAGGGTATCCCACCAGACC 50768 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | || || ||||||||||| ||||| ||||||| ||||| | |||| |||| Sbjct 50769 AACAGAGGTTGATCTTTGCCGGCAAGCAACTTGAAGACGGTCGCACACTGAGCGACTACA 50828 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || || ||||||||| | ||| | ||| || | | || |||||| Sbjct 50829 ACATCCAGAAGGAGTCCACACTTCATCTGGTTCTACGCCTTCGTGGAGGA 50878 Score = 141 bits (156), Expect = 6e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| ||||| ||||| ||||| || |||||| | |||||||| | | Sbjct 50194 AATGCAGATTTTCGTCAAAACTCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCAAG 50253 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | ||| | || || |||||||| ||| | || ||||| | Sbjct 50254 TGACACAATTGAGAATGTGAAAGC-CAAGATCCAAGACAAAGAGGGTATCCCACCAGACC 50312 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | || || || |||||||| ||||| ||||||| ||||| | |||| |||| Sbjct 50313 AGCAAAGGTTGATCTTCGCCGGCAAGCAACTTGAAGACGGTCGCACACTGAGCGACTACA 50372 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || || ||||||||| | ||| | ||| || | | || |||||| Sbjct 50373 ACATCCAGAAGGAGTCCACACTTCATCTGGTTCTACGTCTTCGTGGAGGA 50422 Score = 141 bits (156), Expect = 6e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || ||||| ||||| || |||||| | |||||||| | | Sbjct 50422 AATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCAAG 50481 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | ||| | || || |||||||| ||| | || ||||| | Sbjct 50482 TGACACAATTGAGAATGTGAAAGC-CAAGATCCAAGACAAAGAGGGTATCCCACCAGACC 50540 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | || || || |||||||| ||||| ||||||| ||||| | |||| |||| Sbjct 50541 AGCAAAGGTTGATCTTCGCCGGCAAGCAACTTGAAGACGGTCGCACACTGAGCGACTACA 50600 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || || ||||||||| | ||| | ||| || | || |||||||| Sbjct 50601 ACATCCAGAAGGAGTCCACACTTCATCTGGTTCTACGTCTGAGAGGAGGA 50650 Score = 138 bits (152), Expect = 8e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || ||||| ||||| || |||||| | |||||||| | | Sbjct 49510 AATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCAAG 49569 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | ||| | || || |||||||| ||| | || ||||| | Sbjct 49570 TGACACAATTGAGAATGTGAAAGC-CAAGATCCAAGACAAAGAGGGTATCCCACCAGACC 49628 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | || || || |||||||| ||||| ||||||| |||||| | | || |||| Sbjct 49629 AGCAAAGGTTGATCTTCGCCGGCAAGCAACTTGAAGACGGACGCACACTGAGTGACTACA 49688 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || || ||||||||| | ||| | ||| || | | || |||||| Sbjct 49689 ACATCCAGAAGGAGTCCACACTTCATCTGGTTCTACGTCTTCGTGGAGGA 49738 Score = 138 bits (152), Expect = 8e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || ||||| ||||| || |||||| | |||||||| | | Sbjct 49738 AATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCAAG 49797 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | ||| | || || |||||||| ||| | || ||||| | Sbjct 49798 TGACACAATTGAGAATGTGAAAGC-CAAGATCCAAGACAAAGAGGGTATCCCACCAGACC 49856 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | || || || |||||||| ||||| ||||||| ||||| | |||| |||| Sbjct 49857 AGCAAAGGTTGATCTTCGCCGGCAAGCAACTTGAAGACGGTCGCACACTGAGCGACTACA 49916 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || || ||||||||| | ||| | ||| || | | || |||||| Sbjct 49917 ACATCCAGAAGGAGTCCACACTTCATCTGGTTCTACGCCTTCGTGGAGGA 49966 Score = 138 bits (152), Expect = 8e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || ||||| ||||| || |||||| | |||||||| | | Sbjct 49966 AATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCAAG 50025 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | ||| | || || |||||||| ||| | || ||||| | Sbjct 50026 TGACACAATTGAGAATGTGAAAGC-CAAGATCCAAGACAAAGAGGGTATCCCACCAGACC 50084 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | || || || |||||||| ||||| ||||||| ||||| | |||| |||| Sbjct 50085 AGCAAAGGTTGATCTTCGCCGGCAAGCAACTTGAAGACGGTCGCACACTGAGCGACTACA 50144 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || || ||||||||| | ||| | ||| || | | || |||||| Sbjct 50145 ACATCCAGAAGGAGTCCACACTTCATCTGGTTCTACGCCTTCGTGGAGGA 50194 Score = 118 bits (130), Expect = 7e-22 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 23604 ACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGA 23663 ||| || |||||||| || || || || || || |||||||| |||||| | || || || Sbjct 49276 ACTCAACATGCAGATCTTTGTGAAGACTCTGACCGGAAAAACCATCACTTTAGAGGTCGA 49335 Query 23664 CTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 | | || || | |||| | || |||||| ||||||||||| | ||||| Sbjct 49336 ACCGAGCGATACGATCGAAAATGTGAAGGCGAAAATTCAGGACAAAGAAGGCATTCCGCC 49395 Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGA 23783 || ||||| | | || || |||||||| ||||| ||||||| |||||| | | || Sbjct 49396 CGACCAACAAAGACTTATCTTCGCCGGCAAGCAACTCGAAGACGGACGCACACTGAGTGA 49455 Query 23784 TTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||||||| || || ||||||||| | ||| | ||| || | | || |||||| Sbjct 49456 CTACAACATCCAGAAGGAGTCCACACTTCATCTGGTTCTACGTCTTCGTGGAGGA 49510 >seq10777 Length=1546546 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| ||||| || ||||| ||||| || ||||| || | | Sbjct 767466 ATGCAAATCTTTGTGAAAACACTCACTGGTAAAACTATCACCCTAGAAGTCGAGCCTAGT 767525 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | ||||| |||||| ||||| ||||| | || ||||| ||| Sbjct 767526 GACACGATCGAGAATGTAAAAGCGAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 767585 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||||||||| || ||||| ||||| || ||||| | || || || |||| |||||| Sbjct 767586 CAGCGTTTAATTTTCGCCGGAAAACAGCTTGAAGATGGCCGAACCCTAAGCGACTACAAC 767645 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || |||||||| || | || | ||| || | | ||||||||| Sbjct 767646 ATCCAGAAAGAGTCGACCCTTCACCTGGTTCTACGTCTCCGAGGAGGA 767693 >seq10485 Length=261005 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || ||||| || || ||||| |||||||| |||||||| | | Sbjct 97889 AATGCAAATCTTTGTGAAGACCCTGACCGGGAAAACCATCACTCTAGAAGTTGAACCAAG 97948 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | ||| | |||| || ||||| ||||| | || ||||| | Sbjct 97949 CGACACAATCGAGAATGTGAAAGCTAAAA-TTCAAGACAAGGAAGGCATTCCCCCAGACC 98007 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||||||||| || || ||||| |||||||| ||||| | || || | |||| |||| Sbjct 98008 AACAGCGTTTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTTAGCGACTACA 98067 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || |||||||| || | || || ||| || | | |||||||| Sbjct 98068 ACATCCAGAAAGAGTCGACTCTTCACTTGGTTCTACGTCTCAGAGGAGGA 98117 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || ||||| ||||| || || || ||||| || |||||||| | | Sbjct 97433 AATGCAAATCTTTGTGAAAACACTCACTGGCAAGACTATCACCCTAGAAGTTGAGCCTAG 97492 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | ||| |||||| ||||| ||||| | || ||||| || Sbjct 97493 CGATACGATCGAAAATGTGAAAGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCA 97552 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||||||| || || || |||||||| ||||| | || || | |||| ||||| Sbjct 97553 ACAGCGTTTAATTTTCGCTGGTAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACAA 97612 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || |||||||| || | || | ||| || | | |||||||| Sbjct 97613 CATCCAGAAAGAGTCGACCCTTCACCTGGTTCTACGTCTCAGAGGAGGA 97661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337965093008432