Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq10485 140 8e-28 seq10493 131 4e-25 seq6367 111 4e-19 seq10777 107 5e-18 >seq10485 Length=261005 Score = 140 bits (154), Expect = 8e-28 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| || ||||| |||| ||||| ||| | |||| |||||| Sbjct 97873 AGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTAAGGGTTCGGCCATCT 97814 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||||||| || || |||||||| |||||||||||||| || ||||| |||||||||||| Sbjct 97813 TCTAGCTGTTTTCCGGCGAAGATGAGTCGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 97754 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| || |||||| ||||| ||||| | ||| || |||| ||||| || Sbjct 97753 TGAAT-TTTAGCTTTCACATTCTCGATTGTGTCGCTTGGTTCAACTTCTAGAGTGATGGT 97695 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || |||| || || | || | ||||||| Sbjct 97694 TTTCCCGGTCAGGGTCTTCACAAAGATTTGCATT 97661 Score = 127 bits (140), Expect = 5e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || ||||| |||| ||||| ||| || |||| |||||| Sbjct 97645 AGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCT 97586 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || |||||||| || | || |||||||| || ||||| |||||||||||| Sbjct 97585 TCGAGTTGTTTACCAGCGAAAATTAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 97526 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| || |||||| |||||| || || | || || |||| ||||| || Sbjct 97525 TGAAT-TTTAGCTTTCACATTTTCGATCGTATCGCTAGGCTCAACTTCTAGGGTGATAGT 97467 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||| || | ||||| | || | ||||||| Sbjct 97466 CTTGCCAGTGAGTGTTTTCACAAAGATTTGCATT 97433 Score = 118 bits (130), Expect = 3e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| || ||||| |||| ||||| ||| | |||| |||||| Sbjct 98101 AGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTAAGGGTTCGGCCATCT 98042 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || |||||||| | || |||||||| || ||||| |||||||||||| Sbjct 98041 TCGAGTTGTTTTCCGGCGAAGATGAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 97982 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| || |||||| ||||| ||||| | ||| || |||| ||||| || Sbjct 97981 TGAAT-TTTAGCTTTCACATTCTCGATTGTGTCGCTTGGTTCAACTTCTAGAGTGATGGT 97923 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || |||| || || | || | ||||||| Sbjct 97922 TTTCCCGGTCAGGGTCTTCACAAAGATTTGCATT 97889 >seq10493 Length=264610 Score = 131 bits (144), Expect = 4e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || || ||||| || || |||| ||||| || || || Sbjct 49504 ACGAAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACTCAGTGT 49445 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || ||||| || ||||||||||||| |||||||||||||||||| || Sbjct 49444 GCGTCCGTCTTCGAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGGTCGGGCGGAATGCC 49385 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||| || || || ||||||| |||||| || || | ||| || ||||| Sbjct 49384 TTCTTTGTCCTGAATTTTCGCCTTCACATTTTCGATCGTATCGCTCGGTTCGACCTCTAA 49325 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || || |||| ||| || | || | ||||| || Sbjct 49324 AGTGATGGTTTTTCCGGTCAGAGTCTTCACAAAGATCTGCATGTT 49280 Score = 114 bits (126), Expect = 3e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || || ||||| || || |||| ||||| ||| || || Sbjct 50416 ACGAAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGTGT 50357 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || ||||| || |||||||| | | ||| ||||| || || ||||| Sbjct 50356 GCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGGATACC 50297 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || |||||||||||||| |||||| || || ||||| | ||| || || || Sbjct 50296 CTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTCCAA 50237 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| || || | |||||| | ||| | |||||| Sbjct 50236 AGTGATGGTCTTTCCAGTGAGAGTTTTGACGAAAATCTGCATT 50194 Score = 109 bits (120), Expect = 1e-18 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || || ||||| || || |||| ||||| ||| || || Sbjct 49960 ACGAAGGCGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGTGT 49901 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || ||||| || |||||||| | | ||| ||||| || || ||||| Sbjct 49900 GCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGGATACC 49841 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || |||||||||||||| |||||| || || ||||| | ||| || || || Sbjct 49840 CTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTCCAA 49781 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| || || | ||| || | ||| | |||||| Sbjct 49780 AGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 49738 Score = 109 bits (120), Expect = 1e-18 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || || ||||| || || |||| ||||| ||| || || Sbjct 50188 ACGAAGGCGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGTGT 50129 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || ||||| || |||||||| | | ||| ||||| || || ||||| Sbjct 50128 GCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGGATACC 50069 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || |||||||||||||| |||||| || || ||||| | ||| || || || Sbjct 50068 CTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTCCAA 50009 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| || || | ||| || | ||| | |||||| Sbjct 50008 AGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 49966 Score = 109 bits (120), Expect = 1e-18 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || || ||||| || || |||| ||||| ||| || || Sbjct 50872 ACGAAGGCGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGTGT 50813 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || ||||| || || ||||| | | |||||||| || || ||||| Sbjct 50812 GCGACCGTCTTCAAGTTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGTGGGATACC 50753 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || |||||||||||||| |||||| || || ||||| | ||| || || || Sbjct 50752 CTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTCCAA 50693 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| || || | |||||| | ||| | |||||| Sbjct 50692 AGTGATGGTCTTTCCAGTGAGAGTTTTGACGAAAATCTGCATT 50650 Score = 105 bits (116), Expect = 2e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || || ||||| || || |||| ||||| || || || Sbjct 49732 ACGAAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACTCAGTGT 49673 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || ||||| || |||||||| | | ||| ||||| || || ||||| Sbjct 49672 GCGTCCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGGATACC 49613 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || |||||||||||||| |||||| || || ||||| | ||| || || || Sbjct 49612 CTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTCCAA 49553 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| || || | ||| || | ||| | |||||| Sbjct 49552 AGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 49510 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || || ||||| || || |||| ||||| ||| || || | || ||| Sbjct 50634 AGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGTGTGCGACCGTCT 50575 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| | | ||| ||||| || || ||||| || |||||| Sbjct 50574 TCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGGATACCCTCTTTGTCT 50515 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| || || ||||| | ||| || || || ||||| ||| Sbjct 50514 TGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTCCAAAGTGATGGTC 50455 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || | ||| || | ||| | |||||| Sbjct 50454 TTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 50422 >seq6367 Length=7437 Score = 111 bits (122), Expect = 4e-19 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||||||||||||||| |||||||| || || ||||| || || |||||||| Sbjct 6637 GAAAATTTGACCATCAGTAATAGAAATAACATTAGTTGGAATATATGCGGACACATCACC 6578 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 |||||| ||||| | || |||||| || |||| || ||| |||| ||| Sbjct 6577 TGCTTGAGTTTCAATAATAGGTAAAGCAGTTAAAGAACCAGCACCTAAA 6529 Score = 105 bits (116), Expect = 2e-17 Identities = 202/293 (69%), Gaps = 10/293 (3%) Strand=Plus/Plus Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATA 7503 |||||| | || | |||| ||| ||||| | || | |||| | ||||| | ||||| Sbjct 1820 TTATATATCATTTATGGTATTTTTGCTGGTGTAATTGCTACTGTTTTTTCCGTATTTATA 1879 Query 7504 AGGTTAGAA-TTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAA 7562 | ||||| |||| | || ||| || | || ||||||| ||| | || || Sbjct 1880 CGTTTAGAGCTTAG-TATGCCAGGTACTGGTGTTTTTGATGGTAATTATCAATTGTATAA 1938 Query 7563 CGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGAT 7622 ||| ||||||| || ||||| || | ||| ||||||||||| ||||||| ||| | | Sbjct 1939 TGTTGTTATTACTGCACATGCACTTTTAATGCTTTTCTTTTTTATTATGCCCGTTTTATT 1998 Query 7623 AGGCGGTTTCGGAAAT----TGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 ||| ||||| || ||| |||| | |||| | || ||||| ||||||||||| | Sbjct 1999 AGGAGGTTTTGGTAATCTTATGAT--GCCGCTTT--TAATCGGTGCACCTGATATGGCAT 2054 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731 |||| | | || || |||||||||| || || ||||| ||| || || Sbjct 2055 TTCCTCGTTTAAATAACTTAAGTTTTTGGTTTTTAGTACCTTCTTTACTTTTA 2107 >seq10777 Length=1546546 Score = 107 bits (118), Expect = 5e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || ||||| |||| ||||| ||| | |||| |||||| Sbjct 767677 AGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTTAGGGTTCGGCCATCT 767618 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || ||||| || | || |||||||| || ||||| |||||||||||| Sbjct 767617 TCAAGCTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 767558 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| || || ||| ||||| ||||| | || || |||| ||||| || Sbjct 767557 TGAAT-TTTCGCTTTTACATTCTCGATCGTGTCACTAGGCTCGACTTCTAGGGTGATAGT 767499 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||||| | || | |||||| Sbjct 767498 TTTACCAGTGAGTGTTTTCACAAAGATTTGCAT 767466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192366122377976