Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq8589 214 2e-50 seq10743 95.1 1e-14 >seq8589 Length=14632 Score = 214 bits (236), Expect = 2e-50 Identities = 410/596 (69%), Gaps = 14/596 (2%) Strand=Plus/Plus Query 4542 AATAAACAC-GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAA 4600 |||| ||| |||||||||||||||| ||||| || | ||| | ||||||||||| Sbjct 5788 AATATGCACTGCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAA 5847 Query 4601 CGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGA 4660 ||||| || |||||||| ||||| || || | |||||| |||| ||| | || || Sbjct 5848 TGTTAAACCAGGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGA 5907 Query 4661 AAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTT 4720 |||||||| ||||| || || ||||| || | | || | || || | Sbjct 5908 GAAGAATATTCCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAAAGAA-----TCA 5962 Query 4721 GTCTTTAATCCATTTTAATGCCCAGTTAGCTTTT-TTCTTAACGCACGGAATTGTGTATA 4779 | || |||||||||||||||||| | |||||| || ||| || |||| | | Sbjct 5963 GACTC-AATCCATTTTAATGCCCATTCTGCTTTTCTTTTTATTGC-TGGAAACACTTCAA 6020 Query 4780 TAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGC 4839 |||| | ||||||||| ||| || | |||| | |||||| || || | || Sbjct 6021 TAGCATGGAATAATTTATCTTTCTCTACCTCATCTTTCACATAAGTATCAATCAAAAGAG 6080 Query 4840 TATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTT 4899 ||| |||| ||| ||||| || || ||| |||||||| || || || |||||| Sbjct 6081 AATAGGTTTCGCTATGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTT 6140 Query 4900 CTGTTACTTGAACTTCGTT-ACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCA 4958 | | ||| ||||| || ||||||| ||||| |||| ||||| || || || |||||| Sbjct 6141 CGGCATATTGCACTTCATTAACAAAAT-TTTCTGCTAAATTTTCATTCACAATCCCGTCA 6199 Query 4959 CTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTT-- 5016 || |||||||| || |||| ||| ||||| || | ||| || || | || Sbjct 6200 GATGCAGCAAAAAAAGCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTC 6259 Query 5017 -TTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 | ||||||| | | ||||| | ||||| | ||||||| |||||||||| || Sbjct 6260 GTGTTCCAGTCTGTGATATCTTGATGCAAATCTATTTCTTCAGCAGTCCAAAAACTTGCC 6319 Query 5076 TCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 ||| |||||||||| |||||||||| ||| || ||| |||| |||||||| Sbjct 6320 TCCATTTTTTTGTACCATTCCCAAATATCATGATGCTTAATTGGAAAAATGACAAA 6375 >seq10743 Length=1036592 Score = 95.1 bits (104), Expect = 1e-14 Identities = 171/242 (71%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 4623 CTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCG 4682 ||||| || ||||| || || || ||||| |||||||||||||| ||||| |||||||| Sbjct 63020 CTCTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCA 63079 Query 4683 GCAAACGCTACTAATCGGGAC-CCGAACGA-GCTGGCTTTGTCTTTAATCCATTTTAATG 4740 ||||| || | ||||| | || || || ||| | | | || ||||| || | | Sbjct 63080 GCAAAGGCGA-TAATCCTCTCGCCAAATGATGCTCTC-TGGGGGTTGATCCAGTTCAGAG 63137 Query 4741 CCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA-ATTTACTT 4799 |||||| || || ||| | || || || ||||| | ||||| || || | ||| |||| Sbjct 63138 CCCAGTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTT 63197 Query 4800 TTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATA 4859 ||| | | ||||| || | ||||| || ||||| ||||| ||||| || || Sbjct 63198 TTTCCGCCT-TGTCTTTGATCAGGCTCTCTATCAGAAGGCTGTACATCTCAGAGTGGATG 63256 Query 4860 TT 4861 || Sbjct 63257 TT 63258 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/183 (73%), Gaps = 5/183 (3%) Strand=Plus/Minus Query 4623 CTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCG 4682 ||||| || ||||| || || || ||||| |||||||||||||| ||||| |||||||| Sbjct 76904 CTCTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCA 76845 Query 4683 GCAAACGCTACTAATCGGGAC-CCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATG 4740 ||||| || | ||||| | || || | |||| | | | || ||||| || | | Sbjct 76844 GCAAAGGCGA-TAATCCTCTCGCCAAATGAAGCTCTC-TGGGGGTTGATCCAGTTCAGAG 76787 Query 4741 CCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA-ATTTACTT 4799 |||||| || || ||| | || || || ||||| | ||||| || || | ||| |||| Sbjct 76786 CCCAGTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTT 76727 Query 4800 TTT 4802 ||| Sbjct 76726 TTT 76724 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/183 (73%), Gaps = 5/183 (3%) Strand=Plus/Minus Query 4623 CTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCG 4682 ||||| || ||||| || || || ||||| |||||||||||||| ||||| |||||||| Sbjct 90151 CTCTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCA 90092 Query 4683 GCAAACGCTACTAATCGGGAC-CCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATG 4740 ||||| || | ||||| | || || | |||| | | | || ||||| || | | Sbjct 90091 GCAAAGGCGA-TAATCCTCTCGCCAAATGAAGCTCTC-TGGGGGTTGATCCAGTTCAGAG 90034 Query 4741 CCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA-ATTTACTT 4799 |||||| || || ||| | || || || ||||| | ||||| || || | ||| |||| Sbjct 90033 CCCAGTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTT 89974 Query 4800 TTT 4802 ||| Sbjct 89973 TTT 89971 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/183 (73%), Gaps = 5/183 (3%) Strand=Plus/Plus Query 4623 CTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCG 4682 ||||| || ||||| || || || ||||| |||||||||||||| ||||| |||||||| Sbjct 107835 CTCTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCA 107894 Query 4683 GCAAACGCTACTAATCGGGAC-CCGAACGA-GCTGGCTTTGTCTTTAATCCATTTTAATG 4740 ||||| || | ||||| | || || || ||| | | | || ||||| || | | Sbjct 107895 GCAAAGGCGA-TAATCCTCTCGCCAAATGATGCTCTC-TGGGGATTGATCCAGTTCAGAG 107952 Query 4741 CCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA-ATTTACTT 4799 |||||| || || ||| | || || || ||||| | ||||| || || | ||| |||| Sbjct 107953 CCCAGTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTT 108012 Query 4800 TTT 4802 ||| Sbjct 108013 TTT 108015 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/183 (72%), Gaps = 5/183 (3%) Strand=Plus/Minus Query 4623 CTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCG 4682 || || || ||||| || || || ||||| |||||||||||||| ||||| |||||||| Sbjct 81887 CTATTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCA 81828 Query 4683 GCAAACGCTACTAATCGGGAC-CCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATG 4740 ||||| || | ||||| | || || | |||| | | | || ||||| || | | Sbjct 81827 GCAAAGGCGA-TAATCCTCTCGCCAAATGAAGCTCTC-TGGGGGTTGATCCAGTTCAGAG 81770 Query 4741 CCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA-ATTTACTT 4799 |||||| || || ||| | || || || ||||| | ||||| || || | ||| |||| Sbjct 81769 CCCAGTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTT 81710 Query 4800 TTT 4802 ||| Sbjct 81709 TTT 81707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426993368777732