Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq5858 89.7 1e-13 seq2285 86.0 1e-12 >seq5858 Length=7004 Score = 89.7 bits (98), Expect = 1e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 2854 GGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCGAG 2913 || ||||||||||||| ||| ||||||| ||||||||||||| ||||||| ||||| || Sbjct 1120 GGCCCTATAGCTCAGTTGGTCAGAGCAGCGGACTCATAATCCGTTGGTCCCAGGTTCAAG 1061 Query 2914 TCCGTGTGGGCCCACCA 2930 ||| ||||| |||||| Sbjct 1060 TCCTGGTGGGGCCACCA 1044 >seq2285 Length=2034 Score = 86.0 bits (94), Expect = 1e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 9264 CCGTACCGCCGAAAAGTTCGTAGTGCGCCTACCTGACGGCATGCGCGATCGGGTCGCGGA 9323 ||| ||||| || || |||||||| || || ||||| ||||||||||| || | ||||| Sbjct 1160 CCGCACCGCTGACAAATTCGTAGTTCGTCTGCCTGATGGCATGCGCGAACGTATTGCGGA 1219 Query 9324 GACTGCGCGGGACAACCATCGCAGCATGAATTCGGAGATCATCGCCCGCTTGGAACA 9380 || || || | || ||||||||||| ||||||||||| || ||| | || || Sbjct 1220 TGTCGCACGTAACCATCACCGCAGCATGAACTCGGAGATCATTGCTCGCCTTGAGCA 1276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104303416415352