Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8589 232 9e-56 seq10743 109 8e-19 >seq8589 Length=14632 Score = 232 bits (256), Expect = 9e-56 Identities = 408/586 (70%), Gaps = 14/586 (2%) Strand=Plus/Plus Query 48143 TGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACC 48202 ||||||||||||||| | |||||||| | | |||||| |||||||||||||| | ||| Sbjct 5797 TGCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACC 5856 Query 48203 GGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATAT 48262 ||||||| || | ||| || | |||||| || | || | ||| || |||||||| Sbjct 5857 AGGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAAGAATAT 5916 Query 48263 GCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCA 48322 ||||| || || ||||||||| ||||||| || | || | || | ||||| Sbjct 5917 TCCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAAA---GAATCAGACTCAATCCA 5973 Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 | |||||| || || || | |||| || | ||| ||||||| || | Sbjct 5974 TTTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACACTTCAATAGCATGGAATAA 6033 Query 48383 AAAGtttttttCATTGCT-ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGG 48441 | ||| || | || |||||| || |||||||| || |||||| ||| ||||| Sbjct 6034 TTTATCTTTCTC-TACCTCATCTTTCACATAAGTATCAATCAAAAGAGAATAGGTTTCGC 6092 Query 48442 AGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTA 48501 |||||||| || || || |||||||| || ||| || | ||||| | || | Sbjct 6093 TATGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCATATTGCA 6152 Query 48502 CCTCCGTA-CAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAA 48560 | || || |||||| ||| || ||||| ||||| || || || ||| ||||||||| Sbjct 6153 CTTCATTAACAAAATT-TTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCAGCAAAA 6211 Query 48561 AATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTT---TATTCCAGTCA 48617 || ||||| | ||| ||||||||||||||||| | | | | || | |||||||| Sbjct 6212 AAAGCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTCCAGTCT 6271 Query 48618 TTGATATCTTTTGAT--ATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 ||||||| ||||| | ||||| ||||||||| |||||||| |||||| ||||| Sbjct 6272 GTGATATC--TTGATGCAAATCTATTTCTTCAGCAGTCCAAAAACTTGCCTCCATTTTTT 6329 Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 | ||| | ||| |||||| | | ||||| ||||| ||||| Sbjct 6330 TGTACCATTCCCAAATATCATGATGCTTAATTGGAAAAATGACAAA 6375 >seq10743 Length=1036592 Score = 109 bits (120), Expect = 8e-19 Identities = 171/245 (70%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 |||||||||||||| || || ||||| | |||||| |||| ||||| || || || Sbjct 90883 AGTCTATCTGCAACAAACTCAATATACTGTCTCATCAAGGCACAGTTCATGCCAATCAGC 90824 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 || ||||| ||||| || || ||||| || || || ||||||||| || || Sbjct 90823 TTGACTGGAAGAGCAGATGTGAGGAACTCCTGCTCAATGACAACAGCATCCTTGATGATT 90764 Query 48090 GATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAA 48149 | | || || |||||| || || | | | || |||| || || ||||| Sbjct 90763 CCTCTAACAGTCTCCTCATCAGGCTTATTAACTAGGTACTTGTACATCAAGCAGGCAAAG 90704 Query 48150 TCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATT 48209 || ||||| |||||||||||||| || || | || || || ||||| ||||| ||||| Sbjct 90703 TCGCAATGGAGACCTTCATCTCTGCTGATAAGCTCATTCGAGAATGTCAGACCTGGCATA 90644 Query 48210 AGTCC 48214 ||||| Sbjct 90643 AGTCC 90639 Score = 107 bits (118), Expect = 3e-18 Identities = 173/242 (71%), Gaps = 15/242 (6%) Strand=Plus/Plus Query 48219 TTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCA 48278 || || ||||| || || || || || || ||||||||||| ||||| |||||||| ||| Sbjct 63023 TTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGCA 63082 Query 48279 AATGCGGTAAGTCTCTCTCCGTAACTG--GCT---TCGTTGTGTATCCACCGTT--GTGC 48331 || ||| ||| ||||| || || || ||| | | || ||||| ||| | || Sbjct 63083 AAGGCGATAATCCTCTCGCC--AAATGATGCTCTCTGGGGGTTGATCCA--GTTCAGAGC 63138 Query 48332 CCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt 48391 ||| | ||||||||| | |||||||||||||| || |||||||| || ||| | ||| Sbjct 63139 CCAGTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTT 63198 Query 48392 ttCATTGCTATCTTTAACGTAAG--TATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449 ||| | ||||| | | || | ||||| | ||| || ||||| || ||||| || Sbjct 63199 TTCCGCCTTGTCTTTGA--TCAGGCTCTCTATCAGAAGGCTGTACATCTCAGAGTGGATG 63256 Query 48450 TT 48451 || Sbjct 63257 TT 63258 Score = 105 bits (116), Expect = 9e-18 Identities = 175/244 (72%), Gaps = 19/244 (8%) Strand=Plus/Minus Query 48219 TTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCA 48278 || || ||||| || || || || || || ||||||||||| ||||| |||||||| ||| Sbjct 76901 TTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGCA 76842 Query 48279 AATGCGGTAAGTCTCTCTCCGTAACTG--GCT---TCGTTGTGTATCCACCGTT--GTGC 48331 || ||| ||| ||||| || || || ||| | | || ||||| ||| | || Sbjct 76841 AAGGCGATAATCCTCTCGCC--AAATGAAGCTCTCTGGGGGTTGATCCA--GTTCAGAGC 76786 Query 48332 CCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt 48391 ||| | ||||||||| | |||||||||||||| || |||||||| || ||| | ||| Sbjct 76785 CCAGTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTT 76726 Query 48392 ttCATTGC--TATCTTTAACGTAAG--TATCTATTAAAAGACTATACATTTCGGAGTGAA 48447 ||| ||| | ||||| | | || | || || | ||| || ||||| || ||||| | Sbjct 76725 TTC--TGCCTTGTCTTTGA--TCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGA 76670 Query 48448 TATT 48451 | || Sbjct 76669 TGTT 76666 Score = 105 bits (116), Expect = 9e-18 Identities = 175/244 (72%), Gaps = 19/244 (8%) Strand=Plus/Minus Query 48219 TTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCA 48278 || || ||||| || || || || || || ||||||||||| ||||| |||||||| ||| Sbjct 81884 TTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGCA 81825 Query 48279 AATGCGGTAAGTCTCTCTCCGTAACTG--GCT---TCGTTGTGTATCCACCGTT--GTGC 48331 || ||| ||| ||||| || || || ||| | | || ||||| ||| | || Sbjct 81824 AAGGCGATAATCCTCTCGCC--AAATGAAGCTCTCTGGGGGTTGATCCA--GTTCAGAGC 81769 Query 48332 CCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt 48391 ||| | ||||||||| | |||||||||||||| || |||||||| || ||| | ||| Sbjct 81768 CCAGTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTT 81709 Query 48392 ttCATTGC--TATCTTTAACGTAAG--TATCTATTAAAAGACTATACATTTCGGAGTGAA 48447 ||| ||| | ||||| | | || | || || | ||| || ||||| || ||||| | Sbjct 81708 TTC--TGCCTTGTCTTTGA--TCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGA 81653 Query 48448 TATT 48451 | || Sbjct 81652 TGTT 81649 Score = 105 bits (116), Expect = 9e-18 Identities = 175/244 (72%), Gaps = 19/244 (8%) Strand=Plus/Minus Query 48219 TTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCA 48278 || || ||||| || || || || || || ||||||||||| ||||| |||||||| ||| Sbjct 90148 TTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGCA 90089 Query 48279 AATGCGGTAAGTCTCTCTCCGTAACTG--GCT---TCGTTGTGTATCCACCGTT--GTGC 48331 || ||| ||| ||||| || || || ||| | | || ||||| ||| | || Sbjct 90088 AAGGCGATAATCCTCTCGCC--AAATGAAGCTCTCTGGGGGTTGATCCA--GTTCAGAGC 90033 Query 48332 CCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt 48391 ||| | ||||||||| | |||||||||||||| || |||||||| || ||| | ||| Sbjct 90032 CCAGTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTT 89973 Query 48392 ttCATTGC--TATCTTTAACGTAAG--TATCTATTAAAAGACTATACATTTCGGAGTGAA 48447 ||| ||| | ||||| | | || | || || | ||| || ||||| || ||||| | Sbjct 89972 TTC--TGCCTTGTCTTTGA--TCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGA 89917 Query 48448 TATT 48451 | || Sbjct 89916 TGTT 89913 Score = 104 bits (114), Expect = 3e-17 Identities = 170/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 |||||||||||||| || || ||||| | |||||| |||| ||||| || || || Sbjct 107196 AGTCTATCTGCAACAAACTCAATATACTGTCTCATCAAGGCACAGTTCATGCCAATCAGC 107255 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 || || || ||||| || || ||||| || || || ||||||||| || || Sbjct 107256 TTGACGGGAAGAGCAGATGTGAGGAACTCCTGCTCAATGACAACAGCATCCTTGATGATT 107315 Query 48090 GATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAA 48149 | | || || |||||| || || | | | || |||| || || ||||| Sbjct 107316 CCTCTAACAGTCTCCTCATCAGGCTTATTAACTAGGTACTTGTACATCAAGCAGGCAAAG 107375 Query 48150 TCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATT 48209 || ||||| |||||||||||||| || || | || || || ||||| ||||| ||||| Sbjct 107376 TCGCAATGGAGACCTTCATCTCTGCTGATAAGCTCATTCGAGAATGTCAGACCTGGCATA 107435 Query 48210 AGTCC 48214 ||||| Sbjct 107436 AGTCC 107440 Score = 102 bits (112), Expect = 1e-16 Identities = 174/243 (72%), Gaps = 17/243 (7%) Strand=Plus/Plus Query 48219 TTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCA 48278 || || ||||| || || || || || || ||||||||||| ||||| |||||||| ||| Sbjct 107838 TTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGCA 107897 Query 48279 AATGCGGTAAGTCTCTCTCCGTAACTG--GCTTCGTTGTGTATCCA--CCGTT--GTGCC 48332 || ||| ||| ||||| || || || || || || | || | | ||| | ||| Sbjct 107898 AAGGCGATAATCCTCTCGCC--AAATGATGC-TCTCTGGGGATTGATCCAGTTCAGAGCC 107954 Query 48333 CAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttt 48392 || | ||||||||| | |||||||||||||| || |||||||| || ||| | |||| Sbjct 107955 CAGTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTT 108014 Query 48393 tCATTGC--TATCTTTAACGTAAG--TATCTATTAAAAGACTATACATTTCGGAGTGAAT 48448 || ||| | ||||| | | || | || || | ||| || ||||| || ||||| || Sbjct 108015 TC--TGCCTTGTCTTTGA--TCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGAT 108070 Query 48449 ATT 48451 || Sbjct 108071 GTT 108073 Score = 95.1 bits (104), Expect = 2e-14 Identities = 168/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 |||||||||||||| || || ||||| | |||| | |||| ||||| || || || Sbjct 61143 AGTCTATCTGCAACAAACTCAATATACTGTCTCATTAAGGCACAGTTCATGCCAATCAGC 61202 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 || || || ||||| || || ||||| || || || ||||||||| || || Sbjct 61203 TTGACGGGAAGAGCAGATGTGAGGAACTCCTGCTCAATGACAACAGCATCCTTGATGATT 61262 Query 48090 GATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAA 48149 | | || || |||||| || || | | | || |||| || || || || Sbjct 61263 CCTCTAACAGTCTCCTCATCAGGCTTATTAACTAGGTACTTGTACATCAAGCAGGCGAAG 61322 Query 48150 TCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATT 48209 || ||||| |||||||||||||| || || | || || || ||||| ||||| ||||| Sbjct 61323 TCGCAATGGAGACCTTCATCTCTGCTGATAAGCTCATTTGAGAATGTCAGACCTGGCATA 61382 Query 48210 AGTCC 48214 ||||| Sbjct 61383 AGTCC 61387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694574984978560