Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq9558 114 2e-20 >seq9558 Length=35122 Score = 114 bits (126), Expect = 2e-20 Identities = 193/274 (70%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 202495 TTGTCAGCTCTATCAGCGTAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATCGCGTC 202554 ||| ||||| || ||||| || |||||||| ||||| ||||| || || |||||||| Sbjct 330 TTGCCAGCTGTACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCTTCAACATCGCCAG 389 Query 202555 TTACGCCTTGCTGGTACACATGTTTGCACAACAG-GCGAACATGGCGGTAGGCGACTTCG 202613 ||||| |||||| |||||| | || || || |||| | || ||| || ||||||| Sbjct 390 CTACGCATTGCTGACCCACATGCTGGCCCAGCAATGCGACC-TGCAGGTGGGTGACTTCG 448 Query 202614 TCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCTGACCTCCAAC 202673 ||||||| || || || || | ||| ||||||| | | || | || ||| | Sbjct 449 TCTGGACCGGCGGCGACTGCCACATCTACAACAACCATTTCGCCCAGGTCGAGACCCAGC 508 Query 202674 TTACCCGTGA-CCCTAAACCGTTACCGAAGTTGGTTATCAAACGTAAGCCCGATTCCATC 202732 | | || | |||| || | |||| | || ||||| || |||||| |||||| Sbjct 509 TGGCGCGCCAGCCCTTCGCC-TACCCGACGCTGCAGATCAAGCGCCGGCCCGACTCCATC 567 Query 202733 TTCGACTACAAATTCGAAGACTTCGAGGTTGTCG 202766 |||| |||| | | ||| ||||||||||| |||| Sbjct 568 TTCGGCTACGAGTACGAGGACTTCGAGGTCGTCG 601 Score = 86.0 bits (94), Expect = 1e-11 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 202204 CATTGACCAAATCGCCAAAGTGGTTGACCAGCTGCGTAATGACCCCGACAACCGTCGTAT 202263 ||| ||||| |||||| ||||||| | ||||| | |||| |||| ||| || || Sbjct 174 CATCGACCAGATCGCCGAAGTGGTCAAGCAGCTCAAGAGCAACCCGGACAGCCGCCGCAT 233 Query 202264 TATTGTCAGCGCCTGGAACGTGGCAGAGCTAGACG-AGATGGCCTTGGCCCCGTGTCATG 202322 || |||||||||||||||||||| || || | || ||||||| | || || || | Sbjct 234 CATCGTCAGCGCCTGGAACGTGGCCGACCT-GCCGCAGATGGCGCTCATGCCCTGCCACG 292 Query 202323 CGTTCTTCCAGTTCTA 202338 | |||||||||||||| Sbjct 293 CCTTCTTCCAGTTCTA 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787896780167840