Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq9826 172 4e-38 seq2361 100 2e-16 >seq9826 Length=41569 Score = 172 bits (190), Expect = 4e-38 Identities = 281/397 (71%), Gaps = 11/397 (3%) Strand=Plus/Minus Query 96703 GTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATTGGGCCATT 96762 ||| ||||| || ||| | | |||| ||| |||| | |||| || | ||||| || Sbjct 494 GTTCTCAAAGCGCGAGAACTTGCCGAGAAACGCCAGCCGTGCCGTACCCAGCGGGCCGTT 435 Query 96763 TCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCCGGGTGATAAAC 96822 || ||||| |||||||| | ||||| | |||||| ||| | || |||||||| || Sbjct 434 ACGCTGCTTGCCGATAATGATTTCGGCCACGCCCTTGTACTCGGTCTCGGGGTGATACAC 375 Query 96823 TTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCTGATTCACG 96882 |||||||| || | |||||||| | ||| ||||||||||| ||||| || ||||| || Sbjct 374 CTCGTCGCGGTAAACGAACATGATGATGTCGGCGTCCTGCTCGATTGCCCCGGATTCGCG 315 Query 96883 TAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGATTAAGTTGTGA 96942 || || || || | ||| ||||||| | ||||| || || || ||||| || || Sbjct 314 CAAGTCGGAGTTGATCGGGCGTTTGTTAGGGCGCTGCTCCAGGCCACGGTTAAGCTGCGA 255 Query 96943 CAATGCCACCACC-GGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGAGAAATCT 97001 || || | |||| || | ||| ||||| || |||| || || || ||||| || || | Sbjct 254 CAGGGCAATCACCGGGCAGTTG-AATTCTTTGGCCAGGGCTTTGAGCGAGCGGGAGATTT 196 Query 97002 CGGCAATTTCCAGCGTTCGGTTATCTTGCAGCT----CCGGGACGC-GCATAAGTTGCAG 97056 ||| ||| || | ||| | || || ||| || ||| | |||| || ||||| Sbjct 195 CGGAAATCTCATTCACTCGACTGTC--GCCGCTGGAGCCAGGAATCTGCATCAGCTGCAG 138 Query 97057 GTAGTCGATCATAATCATGCTCAAAC-CACCATTTTC 97092 |||||||| ||| |||| || ||| | |||| | ||| Sbjct 137 GTAGTCGACCATGATCAGGC-CAATCTCACCGTGTTC 102 >seq2361 Length=2839 Score = 100 bits (110), Expect = 2e-16 Identities = 223/334 (67%), Gaps = 3/334 (1%) Strand=Plus/Plus Query 44707 CGCCGATCATTTGCATGGTGCCGCCCTGGCTGACGATAATTTCCGTCGTGTAACGTTCTA 44766 |||| | || ||||||||||| | | |||||| ||||| || ||||| || | | Sbjct 1965 CGCCAAGCAGCTGCATGGTGCCCTGCATGTCGACGATGATTTCGGTGGTGTAGCGCTTAA 2024 Query 44767 CACCGGCGTCATCTGTCCACTTACGGGTTTTAAGTTTCCCTTCGATGTAGACCTGAGAAC 44826 | ||| | | || ||||| ||||| | || || || ||||| || ||||| |||| Sbjct 2025 CGCCGTCTTTTTC---CCACTCGCGGGTCTGCAGCTTGCCCTCGATATATACCTGCGAAC 2081 Query 44827 CTTTTCGTAAATACTCACTCGCAATTTCAGCAAGTTTTCCGAACAAAACGACTTTATGCC 44886 |||| || | ||||| | ||||| || |||| || ||||||| || |||| Sbjct 2082 CTTTGCGCAGGTACTCGCCAGCAATCTCGGCAACCTTGCCGAACAGCGACACACGGTGCC 2141 Query 44887 ATTCTGTTTGCTCTTTCTGTTGGCCCGTTTGCTTGTCGCGCCATGATTCATTCGTTGCGA 44946 | || |||| ||| || ||||| || ||||||||| ||| || | || || | Sbjct 2142 ACTCGGTTTTCTCGACCTTCTGGCCAGTCTGCTTGTCGGTCCACTGCTCGCTGGTCGCCA 2201 Query 44947 TGCTGAGTCTTCCGACCGCTCCGCCATTTGGTATATACCTGATCTCCGGGTCTTGCCCCA 45006 ||| || | |||||| ||| |||| | || | | |||||||| || || Sbjct 2202 GGCTCAGGTTGGTGACCGCGTTGCCGCTTGGCAGGTAGCGAGTTTCCGGGTCCTGTCCGC 2261 Query 45007 GGGTACCAATCAGGATGACTTTGTTTACACCGCG 45040 ||| || | ||| ||||||||||| || || || Sbjct 2262 AGGTGCCGACCAGAATGACTTTGTTAACCCCACG 2295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330855629261464