Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq6294 93.3 5e-14 seq10540 82.4 9e-11 >seq6294 Length=7318 Score = 93.3 bits (102), Expect = 5e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 159829 GTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTGT 159888 ||||||||| ||||||||||| ||||||||||||||| ||||||||||||||| |||||| Sbjct 6621 GTAGCTCAGCTGGATAGAGCATCTGCCTTCTAAGCAGACGGTCACAGGTTCGAATCCTGT 6680 Query 159889 C 159889 | Sbjct 6681 C 6681 >seq10540 Length=328569 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/86 (83%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 13608 GGGCGATTAACTCAGC-GGT--AGAGTGCCTCCTTTACACGGAGTAGGTCGGGGGTTCGA 13664 ||||||||| |||||| ||| |||| |||| ||||||| ||| |||||||||||||| Sbjct 2640 GGGCGATTAGCTCAGCTGGTTCAGAGCACCTCGTTTACACCGAGGGGGTCGGGGGTTCGA 2581 Query 13665 ATCCCTCATCGCCCATGATAAATAAA 13690 | ||||||||||||| | || |||| Sbjct 2580 ACCCCTCATCGCCCACCAAAATTAAA 2555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557579088773280