Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1421 286 4e-72 seq1070 244 1e-59 seq8589 232 7e-56 seq10743 84.2 2e-11 >seq1421 Length=1261 Score = 286 bits (316), Expect = 4e-72 Identities = 224/268 (84%), Gaps = 6/268 (2%) Strand=Plus/Plus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 |||||| ||||||||||||||||| || |||||||||||||||||||||| || ||| Sbjct 773 CTCTGTCTCCCAGGCTGGAGTGCAGAGGTGCGATCTCCGCTCACTGCAACCTCTGCTTCC 832 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCC 8468 | ||||||||| | |||||| ||||||||| ||||||||||||||||||| || Sbjct 833 CAGGTTCAAGCAAGCCTCCTGTCTCAGCCTCTTGAGTAGCTGGGATTACAGGTGTGTGCT 892 Query 8469 ACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGG 8528 | ||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 893 AATTTT------TAATTTTTGTATTTTTAGTAGGGATGGGGTTTCACCATGTTGGCCAGG 946 Query 8529 CTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGA 8588 ||||||| || |||||||||||| |||||||||| |||| ||||| ||||||||||||| Sbjct 947 CTGGTCTTGATCTCCTGACCTCAAGTGATCCACCCACCTCAGCCTCGCAAAGTGCTGGGA 1006 Query 8589 TTACAGGCATGAGCCACCGCGCCTGGCC 8616 ||||||||||||||||| ||||| |||| Sbjct 1007 TTACAGGCATGAGCCACTGCGCCCGGCC 1034 Score = 96.9 bits (106), Expect = 4e-15 Identities = 181/267 (68%), Gaps = 33/267 (12%) Strand=Plus/Plus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 |||||| ||||||||| || |||| | | || ||||||| || ||| |||| Sbjct 8 CTCTGTCACCCAGGCTG---TG-AGTGCCATCATA---GCTCACTACAGCCTTGAACTCC 60 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCC 8468 | | ||| | || |||| ||||||||||| ||||||| ||| |||||| ||| Sbjct 61 TGAGCTCAGGTGATCCTCCCACCTCAGCCTCCCAAGTAGCTAGGACTACAGGTGTGTGCC 120 Query 8469 ACCACGCCAAGCTAATT----TTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGC 8524 |||| | || ||||||| ||| ||||| ||||| | ||| | | |||||| | Sbjct 121 ACCATGACAGGCTAATTACAATTT---TTTTTGGTAGAAATGAGGTCTTGCTATGTTGTC 177 Query 8525 CAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCT 8584 ||||||||||| || || ||| ||| || ||||| | |||| Sbjct 178 CAGGCTGGTCTAGA-------------------CCTCCTTTCTCAGCTTCCCACATTGCT 218 Query 8585 GGGATTACAGGCATGAGCCACCGCGCC 8611 ||||||||||||||||||||| | ||| Sbjct 219 GGGATTACAGGCATGAGCCACTGTGCC 245 >seq1070 Length=1186 Score = 244 bits (270), Expect = 1e-59 Identities = 206/254 (81%), Gaps = 17/254 (7%) Strand=Plus/Minus Query 8359 CAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGGGTTCAAG 8418 ||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||| | Sbjct 907 CAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAGGCTCCGCCTCCCGGGTTCACG 848 Query 8419 CTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCCAA 8478 | ||||||||||||||||||| | ||||| || ||||| || | Sbjct 847 CCATTCTCCTGCCTCAGCCTCTCG--------------CAGGCGCCCGCTACCACACCCA 802 Query 8479 GCTAATTTTT-GTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCG 8537 |||||||||| ||||||||||| |||| |||||||||||||| || ||| ||||||| Sbjct 801 GCTAATTTTTTGTATTTTTAGTGGAGATGGGGTTTCACCATGTCAGCTAGGATGGTCTCA 742 Query 8538 AACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCA 8597 | ||||||||||| |||||| |||||||| || ||| ||||||||||||||| ||||| Sbjct 741 ATCTCCTGACCTC--GTGATCTGCCTGCCTCAGCTTCCTAAAGTGCTGGGATTATAGGCA 684 Query 8598 TGAGCCACCGCGCC 8611 |||||||| ||||| Sbjct 683 TGAGCCACTGCGCC 670 Score = 87.8 bits (96), Expect = 2e-12 Identities = 61/68 (90%), Gaps = 1/68 (1%) Strand=Plus/Minus Query 8352 TGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTC-CGCTCACTGCAACCTCCGCCTCCCG 8410 ||||||||||||||||||||| |||| ||||||| | ||||||||||||| ||||||| Sbjct 72 TGTTGCCCAGGCTGGAGTGCAATGGCATGATCTCTGGTTCACTGCAACCTCTGCCTCCCA 13 Query 8411 GGTTCAAG 8418 |||||||| Sbjct 12 GGTTCAAG 5 >seq8589 Length=14632 Score = 232 bits (256), Expect = 7e-56 Identities = 409/592 (69%), Gaps = 23/592 (4%) Strand=Plus/Plus Query 23511 TGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCC 23570 ||||||||||||||| | |||||||| | | ||| || || |||||||||||||| || Sbjct 5797 TGCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACC 5856 Query 23571 TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAAT 23630 |||||||| |||| ||| || | |||||| || | | ||| | ||| || ||||| || Sbjct 5857 AGGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAAGAATAT 5916 Query 23631 ACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGA--- 23687 || || ||||| ||||| || | ||| | | | |||| | ||||||| Sbjct 5917 TCCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAAAG---------AATCAGACTC 5967 Query 23688 AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTT 23747 |||||||||| || ||| | || || ||||| || |||||| || | Sbjct 5968 AATCCATTTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACACTTCAATAGCATG 6027 Query 23748 TAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACAT 23807 || | | ||| ||| | | |||| | | ||| |||||||| | | | ||| | Sbjct 6028 GAATAATTTATCTTTCTCTACCTCATCTTTCACATAAGTATCAATCAAAAGAGAATAGGT 6087 Query 23808 TTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAA 23867 ||| ||||||||| || || ||| ||||| ||||| ||| || ||||||| | | Sbjct 6088 TTCGCTATGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCATA 6147 Query 23868 TTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGC 23927 ||| || ||||||| ||| ||| ||||||||||| || ||||| || ||| ||||| Sbjct 6148 TTGCACTTCATTAACAAAATTTTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCAGC 6207 Query 23928 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGA--TAATT---TTTTC 23982 ||| ||||| | || || || ||||||| | ||||||| || | ||||| | ||| Sbjct 6208 AAAAAAAGCTAAAATATGCTTAATAAAATATTTTTCATC--TTCATTTAATTTCGTGTTC 6265 Query 23983 CAATCATTAATATCTTTTGAT--AAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGG 24040 || || | ||||| ||||| ||||| | ||| ||| | ||||||||||||||| Sbjct 6266 CAGTCTGTGATATC--TTGATGCAAATCTATTTCTTCAGCAGTCCAAAAACTTGCCTCCA 6323 Query 24041 CACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092 || ||| | ||||||||||| ||| | |||||||| || || || Sbjct 6324 TTTTTTTGTACCATTCCCAAATATCATGATGCTTAATTGGAAAAATGACAAA 6375 >seq10743 Length=1036592 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 23158 TTTTAAAAATCTTCATCTAAAGTGAATTTCACTG---CTTTATCACTATTCATAACACCC 23214 || ||||| || || || ||| | || || || |||| ||||| ||| ||||| Sbjct 106874 TTCTAAAATTCCTCCTCCAAACTAAACTTATGTGAGTCTTTCTCACT---CATGACACCA 106930 Query 23215 ATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATA 23274 |||| || || |||||||||||| | || || || |||||||| ||||||| || ||| Sbjct 106931 CTTTTCTGGTACTCCCCAACACGTTTCTCAAAGAAGTTTGTCTTTCCCTCTAGAGAGATA 106990 Query 23275 TTTTCCATAAAATCAAATGGATT 23297 || ||||| || ||||| || || Sbjct 106991 TTCTCCATGAAGTCAAAGGGGTT 107013 Score = 82.4 bits (90), Expect = 8e-11 Identities = 82/106 (77%), Gaps = 3/106 (3%) Strand=Plus/Plus Query 23192 CTTTATCACTATTCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAAT 23251 |||| ||||| ||| ||||| |||| || || |||||||||||| | || || || | Sbjct 60037 CTTTGTCACT---CATGACACCACTTTTCTGGTACTCCCCAACACGTTTCTCAAAGAAGT 60093 Query 23252 TTGTCTTACCCTCTAATGATATATTTTCCATAAAATCAAATGGATT 23297 ||||||| ||||||| || ||||| ||||| || ||||| || || Sbjct 60094 TTGTCTTTCCCTCTAGAGAGATATTCTCCATGAAGTCAAAGGGGTT 60139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521417573045600