Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octopus_20bimaculoides_20[refseq_20GCF_5F001194135.1_202015-08-18] 151,674 sequences; 2,338,188,782 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq24522 188 9e-43 seq74122 123 3e-23 >seq24522 Length=437104 Score = 188 bits (208), Expect = 9e-43 Identities = 315/453 (70%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 62969 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGT 63028 |||||||| | ||| |||| | || || || || | |||||| || || || || Sbjct 250016 TACCTCATCTGGTGCCGTGTATTCAACAATTTCTGTACATAAATTACTGCATTTTATTGT 250075 Query 63029 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 63088 || | |||||||| || ||||| |||||| | |||||| || || ||| | || || Sbjct 250076 CCCAAGGTTTTGTTGGTTGCTCTTGCGGTTACAAGAATCCTTGTACAGCATGTAAGGTGT 250135 Query 63089 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGA 63148 ||||||||| | |||| |||||||| || | |||||| |||| || | || Sbjct 250136 ACCAGTTTCGGTTTGAGCTTCTATAACTGCATACCAGACTTTCTGAGCTTTCA-----GA 250190 Query 63149 TTTGTATCTCCTTT-----CTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCC 63203 || | | ||||| || |||| || ||||||| ||| || || | |||| Sbjct 250191 GTTCTTTTACCTTTACCAGCTTTTTCATAACTGATATACAAGTCTTCAAATTCTTTTCCC 250250 Query 63204 CAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCC 63263 ||||||| | | || ||||||| ||||||||||| | ||| || || | || Sbjct 250251 CAAACATCCGAAAGGCCTGGGCATTCATTGGGACACATCAATGTCCAATCACCATTTTCT 250310 Query 63264 TTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCT 63322 | ||||||||||| || |||||||||||||| || || ||| || | |||| | || Sbjct 250311 TCAACTCGTTTCATGAAAAGATCAGGAATCCAGAGGGC-ATAGAACAAGTCTCGGGCTCG 250369 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || ||||||||||||||||| ||| ||||| | | ||||| | |||||| Sbjct 250370 CTGTTCATCCTTTCCTGTATTCTTTTTGCAATCAAGGAAGTCAAAGATATCGGCATGCCA 250429 Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 ||||| ||||| || || | | ||||||| || Sbjct 250430 GGGTTCTAAGTAAATAGCAAAAGCTCCAGGGCG 250462 Score = 86.0 bits (94), Expect = 8e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 62380 GGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62439 || ||| ||| |||||||||||||| || | | || |||||||| |||||||| | Sbjct 241859 GGATAATTACCATGAATTCTCCAGACAGCACACGTCTTGTATAAATATTGCTGGTATAGG 241918 Query 62440 GTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499 ||| | |||||||||||||| | ||| || || || || ||||| ||||| || |||| Sbjct 241919 CTTCAATGGACTCATTATTTCCAAGAATCTGGGCTGTGGAAGCAGTTGGCATCGGAGCCA 241978 Score = 86.0 bits (94), Expect = 8e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 62649 TTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTC 62708 || ||||| |||| ||| ||| |||||| | | | | || || || ||||||||| Sbjct 246930 TTTTCAGCAAGTTCACAGCTCATCTCTAAGGAAGCAAAGTAGATAGTAGCAAAGATCTGT 246989 Query 62709 TTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCC 62768 ||||| | ||||||||||| ||| ||||| || || | |||| || || || Sbjct 246990 TTATTCAATTCTTGTGCTTCTTCGCTGTCAAACGGGTATCGCATTAGAAGGAAAGCATCG 247049 Query 62769 GCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 || || |||||||||||||| || || |||| ||||| Sbjct 247050 GCCAAACCTTGAACACCAATGCCAATTGGTCGATGTC 247086 >seq74122 Length=500396 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || |||||||| || || || | || ||||| | |||||||| | Sbjct 192225 CCTCATCTCTGCTGATTAATTCATTGCTGAATGTCAAACCAGGCATGATACCACGCTTCT 192166 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| || || | ||| || || || || || |||||||||||||| ||||||| | Sbjct 192165 TTAACCAGAAAATAGCAGCAAAAGAACCAGAGAAAAAGATTCCTTCTACCCCAGCAAAAG 192106 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCT 33783 ||| || | |||| ||| | | ||||| ||||| || ||||||||| || | Sbjct 192105 CAACAACACGCTCTGAATATGGGACCTTGTCAGAAATCCATTTCAAAGCCCAATCAGCTT 192046 Query 33784 TCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 ||||||| | || ||||| || ||||||||||| || | ||| Sbjct 192045 TCTTTTTAATGCATGGCATTGTCTCTATGGCATTGAACAAATA 192003 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 || |||||||| || ||||||||||| || |||||||| ||||| ||||| || ||| Sbjct 189525 AAGTTTTCATTAACAATTCCATCACTTGCAGCAAAAAAAGCCAAGACATGAGAAATGAAA 189466 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 34085 | | ||| || | | | | ||| | ||| | | ||| || |||| ||| || ||| Sbjct 189465 TGCTGTTCATCAGTTTTCAATTTTTCCCAGTGGCCCAAATCCTTTGATAAATCAACCTCT 189406 Query 34086 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 34145 ||||| ||||| || || || | || || |||||||| |||| ||||| |||||||| Sbjct 189405 TCCACAGTCCAGAAAGAAGCAACAGCTTTCTTATACATGCTCCATATGTCTTGATATTGA 189346 Query 34146 ATTGGGAAAATAACAAATCTATTTG 34170 || || || || ||||| | |||| Sbjct 189345 ATAGGAAACATTACAAAACGGTTTG 189321 Score = 102 bits (112), Expect = 1e-16 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 33275 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33334 |||||| || ||||||||||| |||||||| || | || || || |||||||| ||||| Sbjct 193926 AGACATGACGCCCATTTTTTGATATTCACCAACTCTCTTCTCAAAGAAATTAGTCTTTCC 193867 Query 33335 TTCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 ||||||||| || | |||||| |||||||| ||||| Sbjct 193866 TTCCAATGAGATGTGTTCCATAAAATCAAATGGATT 193831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628623513066720