Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octopus_20bimaculoides_20[refseq_20GCF_5F001194135.1_202015-08-18] 151,674 sequences; 2,338,188,782 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq74122 138 1e-27 seq24522 98.7 9e-16 >seq74122 Length=500396 Score = 138 bits (152), Expect = 1e-27 Identities = 165/223 (74%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || |||| |||||| ||||| || || ||||| | || || || ||| Sbjct 192223 TCATCTCTGCTGATTAATTCATTGCTGAATGTCAAACCAGGCATGATACCACGCTTCTTT 192164 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || ||||||||||| |||||||| || || ||||| || || | ||||| || Sbjct 192163 AACCAGAAAATAGCAGCAAAAGAACCAGAGAAAAAGATTCCTTCTACCCCAGCAAAAGCA 192104 Query 11774 ACTACTCTTTCTCCATAT---ACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCT 11830 || || | ||| |||| ||||||| ||| |||||||| |||||||||||| Sbjct 192103 ACAACACGCTCTGAATATGGGACCTTGTC---AGAAATCCATTTCAAAGCCCAATCAGCT 192047 Query 11831 TTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAAT 11873 |||||||| | |||| |||||| ||||| || || || |||| Sbjct 192046 TTCTTTTTAATGCATGGCATTGTCTCTATGGCATTGAACAAAT 192004 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 12000 AAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTA 12059 || ||||| || || || ||||| ||||| |||||||| | |||||||| || | | Sbjct 189536 AATATCTTACC---AAGTTTTCATTAACAATTCCATCACTTGCAGCAAAAAAAGCCAAGA 189480 Query 12060 TATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTG 12119 ||| || || | | ||| || | | ||||| ||||| | | ||||| |||| Sbjct 189479 CATGAGAAATGAAATGCTGTTCATCAGTTTTCAATTTTTCCCAGTGGCCCAAATCCTTTG 189420 Query 12120 ATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGA 12179 ||||||| || ||||| || ||||| ||| || || | || |||||||| |||| | Sbjct 189419 ATAAATCAACCTCTTCCACAGTCCAGAAAGAAGCAACAGCTTTCTTATACATGCTCCATA 189360 Query 12180 TATCATGATACTTAATAGGGAAAATAACGAA 12210 | || ||||| | |||||| || || || || Sbjct 189359 TGTCTTGATATTGAATAGGAAACATTACAAA 189329 >seq24522 Length=437104 Score = 98.7 bits (108), Expect = 9e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203 || |||||||| | || | ||||||||| |||||||| ||||| | ||||||||||||| Sbjct 241873 AATTCTCCAGACAGCACACGTCTTGTATAAATATTGCTGGTATAGGCTTCAATGGACTCA 241932 Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTT 37263 ||||| | | || || | ||| || ||||| ||||| || || | || ||||| || Sbjct 241933 TTATTTCCAAGAATCTGGGCTGTGGAAGCAGTTGGCATCGGAGCCAGTAACAGGCTGTTC 241992 Query 37264 CTCAATCCATGT 37275 || | ||||||| Sbjct 241993 CTTACTCCATGT 242004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467636512118560