Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octopus_20bimaculoides_20[refseq_20GCF_5F001194135.1_202015-08-18] 151,674 sequences; 2,338,188,782 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq24522 102 8e-17 seq15337 96.9 3e-15 >seq24522 Length=437104 Score = 102 bits (112), Expect = 8e-17 Identities = 101/129 (78%), Gaps = 4/129 (3%) Strand=Plus/Plus Query 153678 TATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAA--TTACTTTGAT 153735 |||| || ||||| | ||| ||||| ||||||||||| | | ||| || ||| | Sbjct 250035 TATTCAACAATTTCTGTACATAAATTACTGCATTTTATT--GTCCCAAGGTTTTGTTGGT 250092 Query 153736 TGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAA 153795 |||| ||||||||||||| |||||||| |||||||| ||||| || ||||||| |||| Sbjct 250093 TGCTCTTGCGGTTACAAGAATCCTTGTACAGCATGTAAGGTGTACCAGTTTCGGTTTGAG 250152 Query 153796 TTTCTATAA 153804 |||||||| Sbjct 250153 CTTCTATAA 250161 >seq15337 Length=1015838 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG--TCTTCGAGCTGTTTAC 139625 ||||| ||||| || || || ||||| | | | | ||| ||||| | |||||| | Sbjct 839041 GTAGATTCTTTCTGGATATTGTAATC--TGAGAGGGTACGACCATCTTCCAACTGTTTCC 838984 Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTT 139685 | ||| | |||| ||| || ||||| ||||| || ||||||||||| ||| ||| | Sbjct 838983 CTGCAAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTTGCCT 838924 Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 ||| | ||| | ||| || | || |||||||| | || | ||||| || |||| | Sbjct 838923 TTACATTTTCAATTGTATCAGACGGTTCCACCTCCAAAGTAATGGTCTTTCCCGTCAGTG 838864 Query 139746 TTTTTACGAATATTTGCAT 139764 ||||||| || |||||||| Sbjct 838863 TTTTTACAAAAATTTGCAT 838845 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/201 (72%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG--TCTTCGAGCTGTTTAC 139625 ||||| ||||| || || || ||||| | | | | ||| ||||| |||||||| | Sbjct 840867 GTAGATTCTTTCTGGATATTGTAATC--TGAGAGAGTACGACCATCTTCCAGCTGTTTTC 840810 Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-T 139684 | ||| | ||||||||||| ||||| || || || ||||||||||| ||| |||| | | Sbjct 840809 CTGCAAAAATCAGACGTTGTTGATCTGGGGGAATACCTTCTTTGTC-TTGAATTTTGGCT 840751 Query 139685 TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAAC 139744 |||| | ||| | || || | ||||| || || | || | || || || || | Sbjct 840750 TTTACATTTTCAATGGTATCTGAAGGCTCTACTTCCAATGTGATGGTTTTTCCTGTGAGT 840691 Query 139745 GTTTTTACGAATATTTGCATA 139765 |||||||| || ||||||||| Sbjct 840690 GTTTTTACAAAAATTTGCATA 840670 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | |||||| || ||| | |||||||| || ||||| ||||| || ||||||||| Sbjct 840597 TCTTCCAACTGTTTCCCTGCAAAAATCAGACGCTGTTGATCTGGAGGAATACCTTCTTTG 840538 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| |||| | ||||| | ||| | ||||||| || || || || | || | Sbjct 840537 TC-TTGAATTTTGGCTTTTACATTTTCAATAGTGTCGGAAGGTTCTACTTCCAATGTGAT 840479 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || || || | |||||||| || ||||||||| Sbjct 840478 GGTTTTTCCTGTAAGTGTTTTTACAAAAATTTGCATA 840442 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| |||||||| || ||| | |||||||| || ||||| || || || ||||||||| Sbjct 840369 TCTTCCAGCTGTTTCCCTGCAAAAATCAGACGCTGTTGATCTGGGGGAATACCTTCTTTG 840310 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| |||| | ||||| | ||| | ||||||| || || || || | || | Sbjct 840309 TC-TTGAATTTTGGCTTTTACATTTTCAATAGTGTCGGAAGGTTCTACTTCCAATGTGAT 840251 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || || || | ||||| || || ||||||||| Sbjct 840250 GGTTTTTCCTGTAAGTGTTTTCACAAAAATTTGCATA 840214 Score = 82.4 bits (90), Expect = 8e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG--TCTTCGAGCT 139619 |||| ||||| ||||| || || || ||||| | | | | ||| ||||| |||| Sbjct 841101 TGAAGGGTAGATTCTTTCTGGATATTGTAATC--TGAGAGAGTACGACCATCTTCCAGCT 841044 Query 139620 GTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTT 139679 |||| || ||| | |||||||| || ||||| ||||| || ||||||||||| ||| | Sbjct 841043 GTTTCCCTGCAAAAATCAGACGCTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCT 840984 Query 139680 TTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 || |||| | ||| | || || | || || || || | || | || || || | Sbjct 840983 TTGCCTTTACATTTTCAATGGTATCTGAAGGTTCTACTTCCAATGTGATGGTTTTTCCTG 840924 Query 139740 TCAACGTTTTTACGAATATTTGCATA 139765 | | ||||| || || ||||||||| Sbjct 840923 TAAGTGTTTTCACAAAAATTTGCATA 840898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495123499860800