Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octopus_20bimaculoides_20[refseq_20GCF_5F001194135.1_202015-08-18] 151,674 sequences; 2,338,188,782 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq24522 192 8e-44 seq74122 136 5e-27 >seq24522 Length=437104 Score = 192 bits (212), Expect = 8e-44 Identities = 304/431 (71%), Gaps = 6/431 (1%) Strand=Plus/Plus Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 |||| | |||||| || || | |||||| || || || || || | |||||||| || Sbjct 250035 TATTCAACAATTTCTGTACATAAATTACTGCATTTTATTGTCCCAAGGTTTTGTTGGTTG 250094 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 ||||| |||||| | |||||| || || || | || ||||||||||| | |||| | Sbjct 250095 CTCTTGCGGTTACAAGAATCCTTGTACAGCATGTAAGGTGTACCAGTTTCGGTTTGAGCT 250154 Query 71863 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTT--CTC 71920 ||||||| || | |||||| |||| || | | |||| || || | || Sbjct 250155 TCTATAACTGCATACCAGACTTTCTGAGCTTTCAGAGT--TCTTTTACCTTTACCAGCTT 250212 Query 71921 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGAC 71980 |||| || |||| || ||| || || | ||||||| ||| | || || | Sbjct 250213 TTTCATAACTGATATACAAGTCTTCAAATTCTTTTCCCCAAACATCCGAAAGGCCTGGGC 250272 Query 71981 ATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGAT 72040 ||||||| ||||||||||||| ||| || |||| || | ||||||||||| || |||| Sbjct 250273 ATTCATTGGGACACATCAATGTCCAATCACCATTTTCTTCAACTCGTTTCATGAAAAGAT 250332 Query 72041 CAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 |||||||||| || || ||| || | |||| || || || || || |||||||||||| Sbjct 250333 CAGGAATCCAGAGGGC-ATAGAACAAGTCTCGGGCTCGCTGTTCATCCTTTCCTGTATTC 250391 Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 ||||| ||| ||||| | | ||||| | |||||| ||||| ||||| || || | | Sbjct 250392 TTTTTGCAATCAAGGAAGTCAAAGATATCGGCATGCCAGGGTTCTAAGTAAATAGCAAAA 250451 Query 72160 ACTCCCGGCCG 72170 |||| || || Sbjct 250452 GCTCCAGGGCG 250462 Score = 89.7 bits (98), Expect = 7e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 71149 AATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCA 71208 ||||||||||||| || | | || |||||||| |||||||| | ||| | |||||| Sbjct 241873 AATTCTCCAGACAGCACACGTCTTGTATAAATATTGCTGGTATAGGCTTCAATGGACTCA 241932 Query 71209 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTT 71268 |||||||| | ||| || || || || ||||| ||||| || |||| || || || || Sbjct 241933 TTATTTCCAAGAATCTGGGCTGTGGAAGCAGTTGGCATCGGAGCCAGTAACAGGCTGTTC 241992 Query 71269 CTAAGACCATGT 71280 || | |||||| Sbjct 241993 CTTACTCCATGT 242004 >seq74122 Length=500396 Score = 136 bits (150), Expect = 5e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || |||||||| ||| || || | || ||||| | |||||||| | Sbjct 192225 CCTCATCTCTGCTGATTAATTCATTGCTGAATGTCAAACCAGGCATGATACCACGCTTCT 192166 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || |||| ||||| || ||||| || |||||||||||||| | ||||| | Sbjct 192165 TTAACCAGAAAATAGCAGCAAAAGAACCAGAGAAAAAGATTCCTTCTACCCCAGCAAAAG 192106 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCT 42266 ||| || | |||| ||| | | ||||| ||||| || ||||||||| || | Sbjct 192105 CAACAACACGCTCTGAATATGGGACCTTGTCAGAAATCCATTTCAAAGCCCAATCAGCTT 192046 Query 42267 TCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 ||||||| | || ||||| || ||||||||||| || | ||| Sbjct 192045 TCTTTTTAATGCATGGCATTGTCTCTATGGCATTGAACAAATA 192003 Score = 109 bits (120), Expect = 7e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 42449 AAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 42508 || ||||| || || ||||| ||||| || |||||||| ||||| ||||| || ||| Sbjct 189525 AAGTTTTCATTAACAATTCCATCACTTGCAGCAAAAAAAGCCAAGACATGAGAAATGAAA 189466 Query 42509 TATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCT 42568 | | ||| || | | | ||||| | ||| | | ||| || |||| ||| || ||| Sbjct 189465 TGCTGTTCATCAGTTTTCAATTTTTCCCAGTGGCCCAAATCCTTTGATAAATCAACCTCT 189406 Query 42569 TCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGA 42628 || || ||||| || || || | || || |||||||| |||| || || ||||||||| Sbjct 189405 TCCACAGTCCAGAAAGAAGCAACAGCTTTCTTATACATGCTCCATATGTCTTGATATTGA 189346 Query 42629 ATTGGGAAAATAACAAATCTATTTG 42653 || || || || ||||| | |||| Sbjct 189345 ATAGGAAACATTACAAAACGGTTTG 189321 Score = 105 bits (116), Expect = 9e-18 Identities = 81/96 (84%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 41758 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCC 41817 |||||| || ||||||||||| |||||||| || | || || || |||||||||||||| Sbjct 193926 AGACATGACGCCCATTTTTTGATATTCACCAACTCTCTTCTCAAAGAAATTAGTCTTTCC 193867 Query 41818 TTCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 ||||||||| || | |||||| |||||||| ||||| Sbjct 193866 TTCCAATGAGATGTGTTCCATAAAATCAAATGGATT 193831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669866770412240