Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octopus_20bimaculoides_20[refseq_20GCF_5F001194135.1_202015-08-18] 151,674 sequences; 2,338,188,782 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq15337 107 2e-18 seq24522 89.7 5e-13 >seq15337 Length=1015838 Score = 107 bits (118), Expect = 2e-18 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG--TCTTCGAGTTGTTTAC 143045 || |||||||| || || |||||||| | | | | ||| ||||| | ||||| | Sbjct 840639 GTTGATTCTTTCTGGATATTGTAATC--TGAGAGAGTACGACCATCTTCCAACTGTTTCC 840582 Query 143046 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTT 143105 | ||| | |||||||| || ||||| ||||| || ||||||||||| |||||| || Sbjct 840581 CTGCAAAAATCAGACGCTGTTGATCTGGAGGAATACCTTCTTTGTCTTGAATTTTGGCTT 840522 Query 143106 TTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATG 143165 ||| | ||| | ||||| | ||||||||||| | || | || || || || | || Sbjct 840521 TTACATTTTCAATAGTGTCGGAAGGTTCTACTTCCAATGTGATGGTTTTTCCTGTAAGTG 840462 Query 143166 TTTTTACGAATATTTGCATA 143185 ||||||| || ||||||||| Sbjct 840461 TTTTTACAAAAATTTGCATA 840442 Score = 107 bits (118), Expect = 2e-18 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG--TCTTCGAGTTGTTTAC 143045 ||||||||||| || || |||||||| | | | | ||| ||||| || ||||| | Sbjct 840867 GTAGATTCTTTCTGGATATTGTAATC--TGAGAGAGTACGACCATCTTCCAGCTGTTTTC 840810 Query 143046 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTT 143105 | ||| | ||||||||||| ||||| || || || ||||||||||| |||||| || Sbjct 840809 CTGCAAAAATCAGACGTTGTTGATCTGGGGGAATACCTTCTTTGTCTTGAATTTTGGCTT 840750 Query 143106 TTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATG 143165 ||| | ||| | || || | || |||||||| | || | || || || || | || Sbjct 840749 TTACATTTTCAATGGTATCTGAAGGCTCTACTTCCAATGTGATGGTTTTTCCTGTGAGTG 840690 Query 143166 TTTTTACGAATATTTGCATA 143185 ||||||| || ||||||||| Sbjct 840689 TTTTTACAAAAATTTGCATA 840670 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||||||||| || || |||||||| | || | ||||| || ||||| || Sbjct 840411 GTAGATTCTTTCTGGATATTGTAATCCGAGAGAGTACGACCATCTTCCAGCTGTTTCCCT 840352 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | |||||||| || ||||| || || || ||||||||||| |||||| |||| Sbjct 840351 GCAAAAATCAGACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGAATTTTGGCTTTT 840292 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||| | ||||||||||| | || | || || || || | |||| Sbjct 840291 ACATTTTCAATAGTGTCGGAAGGTTCTACTTCCAATGTGATGGTTTTTCCTGTAAGTGTT 840232 Query 143168 TTTACGAATATTTGCATA 143185 || || || ||||||||| Sbjct 840231 TTCACAAAAATTTGCATA 840214 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || || | || | ||||| ||||||||||| || || |||||||| | Sbjct 841125 CCACCTCTCAATCGAAGTACAAGATGAAGGGTAGATTCTTTCTGGATATTGTAATC--TG 841068 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | | ||| ||||| || ||||| || ||| | |||||||| || ||||| |||| Sbjct 841067 AGAGAGTACGACCATCTTCCAGCTGTTTCCCTGCAAAAATCAGACGCTGTTGATCTGGAG 841008 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||||||||| || ||| |||| | ||| | || || | ||||||| Sbjct 841007 GAATACCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATGGTATCTGAAGGTTCTA 840948 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| | || | || || || || | |||||| || || ||||||||| Sbjct 840947 CTTCCAATGTGATGGTTTTTCCTGTAAGTGTTTTCACAAAAATTTGCATA 840898 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG--TCTTCGAGTTGTTTAC 143045 ||||||||||| || || |||||||| | | | | ||| ||||| | ||||| | Sbjct 839041 GTAGATTCTTTCTGGATATTGTAATC--TGAGAGGGTACGACCATCTTCCAACTGTTTCC 838984 Query 143046 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTT 143105 | ||| | |||| ||| || ||||| ||||| || ||||||||||| || ||| | Sbjct 838983 CTGCAAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTTGCCT 838924 Query 143106 TTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATG 143165 ||| | ||| | || || | ||||| || || | ||| | ||||| || |||| || Sbjct 838923 TTACATTTTCAATTGTATCAGACGGTTCCACCTCCAAAGTAATGGTCTTTCCCGTCAGTG 838864 Query 143166 TTTTTACGAATATTTGCAT 143184 ||||||| || |||||||| Sbjct 838863 TTTTTACAAAAATTTGCAT 838845 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || ||||| || ||| | |||||||| || ||||| ||||| || ||||||||| Sbjct 839227 TCTTCCAGCTGTTTCCCTGCAAAAATCAGACGCTGTTGATCTGGAGGAATACCTTCTTTG 839168 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || ||| |||| | ||| | || || | ||||||||||| | || | Sbjct 839167 TCTTGGATCTTTGCCTTTACATTTTCAATGGTATCTGAAGGTTCTACTTCCAATGTGATG 839108 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || || || | |||||| || || ||||||||| Sbjct 839107 GTTTTTCCTGTAAGTGTTTTCACAAAAATTTGCATA 839072 >seq24522 Length=437104 Score = 89.7 bits (98), Expect = 5e-13 Identities = 98/127 (77%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 157100 TATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAA--TTACTTTGAT 157157 |||| || ||||| | ||| ||||| ||||||||||| ||| ||| || ||| | Sbjct 250035 TATTCAACAATTTCTGTACATAAATTACTGCATTTTAT-TGTCC-CAAGGTTTTGTTGGT 250092 Query 157158 TGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAA 157217 |||| |||||||| |||| |||||||| | |||||| ||||| || ||||||| |||| Sbjct 250093 TGCTCTTGCGGTTACAAGAATCCTTGTACAGCATGTAAGGTGTACCAGTTTCGGTTTGAG 250152 Query 157218 TTTCTAT 157224 |||||| Sbjct 250153 CTTCTAT 250159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506053138723680