Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octopus_20bimaculoides_20[refseq_20GCF_5F001194135.1_202015-08-18] 151,674 sequences; 2,338,188,782 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq15337 199 9e-46 seq74122 93.3 1e-13 >seq15337 Length=1015838 Score = 199 bits (220), Expect = 9e-46 Identities = 182/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | |||||| ||||| | |||||||||||||| ||||| || || Sbjct 841128 ATACCACCTCTCAATCGAAGTACAAGATGAAGGGTAGATTCTTTCTGGATATTGTAATCT 841069 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| ||||| || ||||| || |||||||| || | ||||||||| ||| Sbjct 841068 GAGAGAGTACGACCATCTTCCAGCTGTTTCCCTGCAAAAATCAGACGCTGTTGATCTGGA 841009 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || |||||||| ||||||||||| | |||||| ||||||| Sbjct 841008 GGAATACCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATGGTATCTGAAGGTTCT 840949 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||| || || || || ||||||||||| ||||| || ||||| Sbjct 840948 ACTTCCAATGTGATGGTTTTTCCTGTAAGTGTTTTCACAAAAATTTGCAT 840899 Score = 194 bits (214), Expect = 4e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| | ||||| ||||| | || ||||||||||| ||||| || || Sbjct 840672 ATACCACCTCTTAGTCGGAGTACAAGATGGAGAGTTGATTCTTTCTGGATATTGTAATCT 840613 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| ||||| | ||||| || |||||||| || | ||||||||| ||| Sbjct 840612 GAGAGAGTACGACCATCTTCCAACTGTTTCCCTGCAAAAATCAGACGCTGTTGATCTGGA 840553 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || ||||| || |||||||||||||| | || ||| ||||||| Sbjct 840552 GGAATACCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTGTCGGAAGGTTCT 840493 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||| || || || || ||||||||||||||||| || ||||| Sbjct 840492 ACTTCCAATGTGATGGTTTTTCCTGTAAGTGTTTTTACAAAAATTTGCAT 840443 Score = 194 bits (214), Expect = 4e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | |||||| ||||| | |||||||||||||| ||||| || || Sbjct 840900 ATACCACCTCTCAGTCGAAGTACAAGATGGAGGGTAGATTCTTTCTGGATATTGTAATCT 840841 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| ||||| || |||||||| |||||||| || | |||||||| || Sbjct 840840 GAGAGAGTACGACCATCTTCCAGCTGTTTTCCTGCAAAAATCAGACGTTGTTGATCTGGG 840781 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || ||||| || |||||||||||||| | |||||| ||| ||| Sbjct 840780 GGAATACCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATGGTATCTGAAGGCTCT 840721 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||| || || || || || |||||||||||||| || ||||| Sbjct 840720 ACTTCCAATGTGATGGTTTTTCCTGTGAGTGTTTTTACAAAAATTTGCAT 840671 Score = 190 bits (210), Expect = 5e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | ||||| ||||| | |||||||||||||| ||||| || || Sbjct 840444 ATACCACCTCTCAGTCGGAGTACAAGATGGAGAGTAGATTCTTTCTGGATATTGTAATCC 840385 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| ||||| || ||||| || |||||||| || | ||||||||| || Sbjct 840384 GAGAGAGTACGACCATCTTCCAGCTGTTTCCCTGCAAAAATCAGACGCTGTTGATCTGGG 840325 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || ||||| || |||||||||||||| | || ||| ||||||| Sbjct 840324 GGAATACCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTGTCGGAAGGTTCT 840265 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||| || || || || ||||||||||| ||||| || ||||| Sbjct 840264 ACTTCCAATGTGATGGTTTTTCCTGTAAGTGTTTTCACAAAAATTTGCAT 840215 Score = 188 bits (208), Expect = 2e-42 Identities = 186/239 (78%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || ||||| ||||| | |||||||||||||| ||||| || || Sbjct 839074 ATACCACCTCTCAACCGGAGTACAAGATGGAGGGTAGATTCTTTCTGGATATTGTAATCT 839015 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||| | ||||| || |||||||| | | ||||||||| ||| Sbjct 839014 GAGAGGGTACGACCATCTTCCAACTGTTTCCCTGCAAAAATCAAACGCTGTTGATCTGGA 838955 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || |||||||| ||||||||||| | ||||| ||||| Sbjct 838954 GGAATACCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATTGTATCAGACGGTTCC 838895 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG-TGTA 104567 ||||| | ||||| ||||| || || |||||||||||||| || ||||||||| |||| Sbjct 838894 ACCTCCAAAGTAATGGTCTTTCCCGTCAGTGTTTTTACAAAAATTTGCATTTTGCTGTA 838836 Score = 154 bits (170), Expect = 3e-32 Identities = 136/170 (80%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| ||||| || ||||| || |||||||| || | ||||||||| ||| Sbjct 839242 GAGAGAGTACGACCATCTTCCAGCTGTTTCCCTGCAAAAATCAGACGCTGTTGATCTGGA 839183 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || |||||||| ||||||||||| | |||||| ||||||| Sbjct 839182 GGAATACCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATGGTATCTGAAGGTTCT 839123 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||| || || || || ||||||||||| ||||| || ||||| Sbjct 839122 ACTTCCAATGTGATGGTTTTTCCTGTAAGTGTTTTCACAAAAATTTGCAT 839073 >seq74122 Length=500396 Score = 93.3 bits (102), Expect = 1e-13 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762 ||||| || ||||| || || || || |||||||| ||||| || | || |||||| Sbjct 189329 TTTGTAATGTTTCCTATTCAATATCAAGACATATGGAGCATGTATAAGAAAGCTGTTGCT 189388 Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTA 268822 ||||| |||||||| ||||| || ||| | || | || || | ||| |||| || Sbjct 189389 TCTTTCTGGACTGTGGAAGAGGTTGATTTATCAAAGGATTTGGGCCACTGGGAAAAATTG 189448 Query 268823 AAACCAGAAGAA-AGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGG 268881 ||| | || ||| || | || || ||| || | | || |||||||| | |||||||| Sbjct 189449 AAAACTGATGAACAGCA-TTTCATTTCTCATGTCTTGGCTTTTTTTGCTGCAAGTGATGG 189507 Query 268882 TATCGTTAACGAAAA 268896 || ||||| ||||| Sbjct 189508 AATTGTTAATGAAAA 189522 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 269077 aaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGCGCCTTACGGAGAAAGGTT 269136 ||| ||| |||| |||||| |||||||||| || | | || || ||| | | Sbjct 192041 AAAGAAAGCTGATTGGGCTTTGAAATGGATTTCTGACAAGGTCCCATATTCAGAGCGTGT 192100 Query 269137 AGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTG 269196 ||||||||||| | |||||||| || || || || || |||||||| ||||| || || Sbjct 192101 TGTTGCTTTTGCTGGGGTAGAAGGAATCTTTTTCTCTGGTTCTTTTGCTGCTATTTTCTG 192160 Query 269197 GTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGA 269256 ||| ||||| | || | ||||| || || || ||| || ||||| || ||||| || Sbjct 192161 GTTAAAGAAGCGTGGTATCATGCCTGGTTTGACATTCAGCAATGAATTAATCAGCAGAGA 192220 Query 269257 CGA 269259 || Sbjct 192221 TGA 192223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149160860863192